Csa1G165740.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G165740.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10330715 .. 10331953 (-)
Sequence length150
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCACGTATTCTTGTTCTGTCATATTTTTGTTGCTAGAAATTGTGATGAAAAAAAGAACATAATATGCTTGTTTCTTTAACCATCACTCCACCATTGTAAGTTTATGGAAAATTGAGATATTTTTCAAGTACTGTGCAGACATGGACAACTTTCGTTCTCCATCAAGCAGTTACTTAGAGTTTCAGGTATTTACAGGCTAAAGTGAAAAATACTGGCACGGTAATTTAGCTTATAGTACCTAAAGAAAGTGATCACAACACTATTTTCACAAATCATTTGATCCCTTCATCACACATTGTTAGATTAGTAGGTTCAGTCATTAATTTTGTCTTGTATATGGTTAAAATTTGCATTACCTTCGTCTGAATCTTGCTGATATTACTTACAATATTCTCAATCTTCTCCACAGCATTCAAATGGTGGAGAATCATTTTGTATGTTCATTGAAGCTAGCAAGTAACTCTCAATGTTCTATTTTAGATTTTCAATCTCCTTATCAAACTGGAAGAAAGAGAATCGTTTTGTTTGTTGAGGTTTCTTGCCTCTGAGAAATGACACCATTATCAAATCAAATCCAGTTTTGTTCTACATTATGTTGGACTAAAAATTTTACAGGGGTATTCTGTCTCCTGCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGGTCAGTTTAGATTGTGAACTTTTTATAATATCAATATCCTGTTTTGATAAGGTAGGAGTTAGGAATTGCTTACAATCTTATATGACATGTTTGGAAGTACTGATTTGATCATTTTGAAAAACATTCAAAATTAGTTTTATTATATGAAAATTGCAACTAAAAGTATTAATTAAACATTGAATTAATTCCAAGCCATTAGAGCCCATTGCGACATAGAGTGATTCTAAACATGACAATATTGATTGCAATCATTTCAAAACCATTCATGAACATGCTTTTGTTAGGAACCAAGATAGATATGGCTACCTTTGCCCCACATCAGATGATCAATGTGGTATATTTAAGTGGTTTGGCTCTATCACTCCAATAACTCGTTTTTGGGGTGTGGTTTTTCATAGTAGTTAACTACCTAACAGCTTTTTGTTTTACTGATAGTAAACTGCGGCCTTCCCTTATGTGTATGATGACCAAAACAGAAGAAAGCCTCAATTGTTGAGTTTCTCAAATTTTTAGCAAACATCCATGG

mRNA sequence

ATGGACAACTTTCGTTCTCCATCAAGCAGTTACTTAGAGTTTCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGTAAACTGCGGCCTTCCCTTATGTGTATGA

Coding sequence (CDS)

ATGGACAACTTTCGTTCTCCATCAAGCAGTTACTTAGAGTTTCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGTAAACTGCGGCCTTCCCTTATGTGTATGA

Protein sequence

MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV*
Homology
[Close]
BLAST of Csa1G165740.1 vs. TrEMBL
Match: A0A0A0LVT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165740 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 50
          MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV
Sbjct: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 49

[Close]
BLAST of Csa1G165740.1 vs. NCBI nr
Match: gi|700209846|gb|KGN64942.1| (hypothetical protein Csa_1G165740 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 50
          MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV
Sbjct: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 49

The following BLAST results are available for this feature:
BLAST of Csa1G165740.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVT7_CUCSA5.4e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165740 PE=4 SV=1[more]
BLAST of Csa1G165740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209846|gb|KGN64942.1|7.8e-20100.00hypothetical protein Csa_1G165740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G165740Csa1G165740gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G165740.1Csa1G165740.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G165740.1.utr3p1Csa1G165740.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G165740.1.cds3Csa1G165740.1.cds3CDS
Csa1G165740.1.cds2Csa1G165740.1.cds2CDS
Csa1G165740.1.cds1Csa1G165740.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G165740.1.utr5p1Csa1G165740.1.utr5p1five_prime_UTR