Csa1G165740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G165740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10330715 .. 10331953 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGGTTAAAATTTGCATTACCTTCGTCTGAATCTTGCTGATATTACTTACAATATTCTCAATCTTCTCCACAGCATTCAAATGGTGGAGAATCATTTTGTATGTTCATTGAAGCTAGCAAGTAACTCTCAATGTTCTATTTTAGATTTTCAATCTCCTTATCAAACTGGAAGAAAGAGAATCGTTTTGTTTGTTGAGGTTTCTTGCCTCTGAGAAATGACACCATTATCAAATCAAATCCAGTTTTGTTCTACATTATGTTGGACTAAAAATTTTACAGGGGTATTCTGTCTCCTGCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGGTCAGTTTAGATTGTGAACTTTTTATAATATCAATATCCTGTTTTGATAAGGTAGGAGTTAGGAATTGCTTACAATCTTATATGACATGTTTGGAAGTACTGATTTGATCATTTTGAAAAACATTCAAAATTAGTTTTATTATATGAAAATTGCAACTAAAAGTATTAATTAAACATTGAATTAATTCCAAGCCATTAGAGCCCATTGCGACATAGAGTGATTCTAAACATGACAATATTGATTGCAATCATTTCAAAACCATTCATGAACATGCTTTTGTTAGGAACCAAGATAGATATGGCTACCTTTGCCCCACATCAGATGATCAATGTGGTATATTTAAGTGGTTTGGCTCTATCACTCCAATAACTCGTTTTTGGGGTGTGGTTTTTCATAGTAGTTAACTACCTAACAGCTTTTTGTTTTACTGATAGTAAACTGCGGCCTTCCCTTATGTGTATGATGACCAAAACAGAAGAAAGCCTCAATTGTTGAGTTTCTCAAATTTTTAGCAAACATCCATGG

mRNA sequence

ATGACACCATTATCAAATCAAATCCAGTTTTGTTCTACATTATGTTGGACTAAAAATTTTACAGGGGTATTCTGTCTCCTGCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGTAAACTGCGGCCTTCCCTTATGTGTATGA

Coding sequence (CDS)

ATGACACCATTATCAAATCAAATCCAGTTTTGTTCTACATTATGTTGGACTAAAAATTTTACAGGGGTATTCTGTCTCCTGCAGGCATCTTCCCCAAGTCTCAGGTGCTTTACTTTTGCTATTAATGCCCTCTGCTTGCTAAATCTTAAAGAGAAACAAGTAAACTGCGGCCTTCCCTTATGTGTATGA

Protein sequence

MTPLSNQIQFCSTLCWTKNFTGVFCLLQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV*
Homology
[Close]
BLAST of Csa1G165740 vs. TrEMBL
Match: A0A0A0LVT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165740 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 50
          MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV
Sbjct: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 49

[Close]
BLAST of Csa1G165740 vs. NCBI nr
Match: gi|700209846|gb|KGN64942.1| (hypothetical protein Csa_1G165740 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 50
          MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV
Sbjct: 1  MDNFRSPSSSYLEFQASSPSLRCFTFAINALCLLNLKEKQVNCGLPLCV 49

The following BLAST results are available for this feature:
BLAST of Csa1G165740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVT7_CUCSA5.4e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165740 PE=4 SV=1[more]
BLAST of Csa1G165740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209846|gb|KGN64942.1|7.8e-20100.00hypothetical protein Csa_1G165740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU124441cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G165740.2Csa1G165740.2mRNA
Csa1G165740.1Csa1G165740.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU124441CU124441transcribed_cluster