Csa1G108270.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G108270.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 8730488 .. 8730852 (+)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGGTTTAAAAGATTGGTGAATTCTAGAGTTCCGACTGGCATAGTACCAGACCAAACTTGATATCTATTCGGGTCAAGTTGAATTTCTTGGTTGGTAGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

mRNA sequence

ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

Coding sequence (CDS)

ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

Protein sequence

MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVVLTCGFSFNLSRGRSVDGIHHAWRRRSVKL*

Homology

[Close]

BLAST of Csa1G108270.1 vs. TrEMBL
Match: A0A0A0LXT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108270 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60
          MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV
Sbjct: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60

Query: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 90
          LTCGFSFNLSRGRSVDGIHHAWRRRSVKL
Sbjct: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 89

[Close]

BLAST of Csa1G108270.1 vs. NCBI nr
Match: gi|700209705|gb|KGN64801.1| (hypothetical protein Csa_1G108270 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60
          MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV
Sbjct: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60

Query: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 90
          LTCGFSFNLSRGRSVDGIHHAWRRRSVKL
Sbjct: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 89

The following BLAST results are available for this feature:

BLAST of Csa1G108270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXT6_CUCSA	3.3e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108270 PE=4 SV=1	[more]

BLAST of Csa1G108270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209705\|gb\|KGN64801.1\|	4.8e-44	100.00	hypothetical protein Csa_1G108270 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G108270	Csa1G108270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G108270.1	Csa1G108270.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G108270.1.cds1	Csa1G108270.1.cds1	CDS
Csa1G108270.1.cds2	Csa1G108270.1.cds2	CDS