Csa1G108270 (gene) Cucumber (Chinese Long) v2

NameCsa1G108270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8730488 .. 8730852 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGGTTTAAAAGATTGGTGAATTCTAGAGTTCCGACTGGCATAGTACCAGACCAAACTTGATATCTATTCGGGTCAAGTTGAATTTCTTGGTTGGTAGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

mRNA sequence

ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

Coding sequence (CDS)

ATGTCATATTCAGGATTACGAAGAAGTACCATAGGTTCATCTTCGCATGGAGGTATAATAATTCATTGCTCTAAGGATGTTGTTTTCCCCATCAGATGGCCCTCAAGCTTGTGGCTTCTTAGAATGGACAATGCAATGCTTTTTCAGAAAGAGAAGTTTCCTTTGTCGAGCTTGGTGGTTTTGACTTGTGGGTTCAGTTTCAATTTGAGTCGAGGAAGGAGTGTTGATGGAATCCATCATGCTTGGAGGCGTCGGTCCGTGAAGCTCTGA

Protein sequence

MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVVLTCGFSFNLSRGRSVDGIHHAWRRRSVKL*
BLAST of Csa1G108270 vs. TrEMBL
Match: A0A0A0LXT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108270 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60
          MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV
Sbjct: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60

Query: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 90
          LTCGFSFNLSRGRSVDGIHHAWRRRSVKL
Sbjct: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 89

BLAST of Csa1G108270 vs. NCBI nr
Match: gi|700209705|gb|KGN64801.1| (hypothetical protein Csa_1G108270 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60
          MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV
Sbjct: 1  MSYSGLRRSTIGSSSHGGIIIHCSKDVVFPIRWPSSLWLLRMDNAMLFQKEKFPLSSLVV 60

Query: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 90
          LTCGFSFNLSRGRSVDGIHHAWRRRSVKL
Sbjct: 61 LTCGFSFNLSRGRSVDGIHHAWRRRSVKL 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LXT6_CUCSA3.3e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700209705|gb|KGN64801.1|4.8e-44100.00hypothetical protein Csa_1G108270 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172937cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G108270.1Csa1G108270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172937CU172937transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None