Csa1G097680.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G097680.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8567640 .. 8568094 (+)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGGTAGTGCTCTAGGAGTACTTTTCCTTGTAGGTTCTCATCTTAGGAAGTTAGGTTATCCCTAATAGATTTCCCTTCTATTGAGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTGTAAGCTCCTCTTAGGAGACTAGGCTCTTCCTAGTGGATCCTCCTATGAGCTTTTCTTAGCAAAAGCTATGCAGATCCTTCTCCTCTGAGTTCCTCTTAGAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

mRNA sequence

ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

Coding sequence (CDS)

ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

Protein sequence

MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPPSKARLSLVDSPYVVFKKLVSPYWFSLYEFK*
Homology
[Close]
BLAST of Csa1G097680.1 vs. TrEMBL
Match: A0A0A0LUW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097680 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60
          MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP
Sbjct: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60

Query: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 91
          SKARLSLVDSPYVVFKKLVSPYWFSLYEFK
Sbjct: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 90

[Close]
BLAST of Csa1G097680.1 vs. NCBI nr
Match: gi|700209693|gb|KGN64789.1| (hypothetical protein Csa_1G097680 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60
          MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP
Sbjct: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60

Query: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 91
          SKARLSLVDSPYVVFKKLVSPYWFSLYEFK
Sbjct: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 90

The following BLAST results are available for this feature:
BLAST of Csa1G097680.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUW9_CUCSA2.0e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097680 PE=4 SV=1[more]
BLAST of Csa1G097680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209693|gb|KGN64789.1|2.8e-44100.00hypothetical protein Csa_1G097680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G097680Csa1G097680gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G097680.1Csa1G097680.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G097680.1.cds1Csa1G097680.1.cds1CDS
Csa1G097680.1.cds2Csa1G097680.1.cds2CDS
Csa1G097680.1.cds3Csa1G097680.1.cds3CDS