Csa1G097680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G097680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8567640 .. 8568094 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGGTAGTGCTCTAGGAGTACTTTTCCTTGTAGGTTCTCATCTTAGGAAGTTAGGTTATCCCTAATAGATTTCCCTTCTATTGAGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTGTAAGCTCCTCTTAGGAGACTAGGCTCTTCCTAGTGGATCCTCCTATGAGCTTTTCTTAGCAAAAGCTATGCAGATCCTTCTCCTCTGAGTTCCTCTTAGAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

mRNA sequence

ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

Coding sequence (CDS)

ATGGGCAGTTTTACTACCATTATGACAAACCCATATGCTCCTAACGATTCTCTTTACGACACTTGTTCGTTCGAAATCCAAACGGTTTCACATTCAATGGCTCAAAGGTCTTCCTCTGTGGAACCTTTAAGCTCTTCTTGCTTCTCTTGGGAGGCTAGGTTCTCTCTAGTAAGTCCTCCTTCTAAGGCTAGACTCTCCCTTGTGGATTCTCCTTATGTGGTTTTTAAGAAGCTAGTTTCTCCCTACTGGTTTTCCTTGTATGAGTTCAAATAA

Protein sequence

MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPPSKARLSLVDSPYVVFKKLVSPYWFSLYEFK*
Homology
[Close]
BLAST of Csa1G097680 vs. TrEMBL
Match: A0A0A0LUW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097680 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60
          MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP
Sbjct: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60

Query: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 91
          SKARLSLVDSPYVVFKKLVSPYWFSLYEFK
Sbjct: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 90

[Close]
BLAST of Csa1G097680 vs. NCBI nr
Match: gi|700209693|gb|KGN64789.1| (hypothetical protein Csa_1G097680 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60
          MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP
Sbjct: 1  MGSFTTIMTNPYAPNDSLYDTCSFEIQTVSHSMAQRSSSVEPLSSSCFSWEARFSLVSPP 60

Query: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 91
          SKARLSLVDSPYVVFKKLVSPYWFSLYEFK
Sbjct: 61 SKARLSLVDSPYVVFKKLVSPYWFSLYEFK 90

The following BLAST results are available for this feature:
BLAST of Csa1G097680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUW9_CUCSA2.0e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097680 PE=4 SV=1[more]
BLAST of Csa1G097680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209693|gb|KGN64789.1|2.8e-44100.00hypothetical protein Csa_1G097680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G097680.1Csa1G097680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G097680Cucurbita pepo (Zucchini)cpecuB516
Csa1G097680Cucurbita pepo (Zucchini)cpecuB528
Csa1G097680Bottle gourd (USVL1VR-Ls)culsiB047
Csa1G097680Cucumber (Gy14) v2cgybcuB001
Csa1G097680Melon (DHL92) v3.6.1cumedB010
Csa1G097680Silver-seed gourdcarcuB0360
Csa1G097680Silver-seed gourdcarcuB0472
Csa1G097680Silver-seed gourdcarcuB1083
Csa1G097680Watermelon (97103) v2cuwmbB034
Csa1G097680Wax gourdcuwgoB016
Csa1G097680Wax gourdcuwgoB049
Csa1G097680Cucumber (Gy14) v1cgycuB314
Csa1G097680Cucurbita maxima (Rimu)cmacuB203
Csa1G097680Cucurbita maxima (Rimu)cmacuB431
Csa1G097680Cucurbita moschata (Rifu)cmocuB188
Csa1G097680Cucurbita moschata (Rifu)cmocuB421
Csa1G097680Melon (DHL92) v3.5.1cumeB015
Csa1G097680Watermelon (Charleston Gray)cuwcgB037
Csa1G097680Watermelon (97103) v1cuwmB010