Csa1G096080.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G096080.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8460773 .. 8460964 (+)
Sequence length192
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

mRNA sequence

ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

Coding sequence (CDS)

ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

Protein sequence

METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWLRRR*
Homology
[Close]
BLAST of Csa1G096080.1 vs. TrEMBL
Match: A0A0A0LSK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60

Query: 61 RRR 64
          RRR
Sbjct: 61 RRR 63

[Close]
BLAST of Csa1G096080.1 vs. NCBI nr
Match: gi|700209677|gb|KGN64773.1| (hypothetical protein Csa_1G096080 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60

Query: 61 RRR 64
          RRR
Sbjct: 61 RRR 63

The following BLAST results are available for this feature:
BLAST of Csa1G096080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSK8_CUCSA2.0e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1[more]
BLAST of Csa1G096080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209677|gb|KGN64773.1|2.8e-30100.00hypothetical protein Csa_1G096080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G096080Csa1G096080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G096080.1Csa1G096080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G096080.1.cds1Csa1G096080.1.cds1CDS