Csa1G096080 (gene) Cucumber (Chinese Long) v2

NameCsa1G096080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8460773 .. 8460964 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

mRNA sequence

ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

Coding sequence (CDS)

ATGGAGACGATTGGGACGGGGCTACCGGTGAGAACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACGGTTGTGTCTGGCTGGGTTTGGACGGAACAGAGAGGAGAAAAGAGGGAGACAGCCGGCGATGCAGATCTGGACGACGGTTGTGAGCGGAGGGCGTGGCGGTTTTGGCTTCGACGGAGATAG

Protein sequence

METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWLRRR*
BLAST of Csa1G096080 vs. TrEMBL
Match: A0A0A0LSK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60

Query: 61 RRR 64
          RRR
Sbjct: 61 RRR 63

BLAST of Csa1G096080 vs. NCBI nr
Match: gi|700209677|gb|KGN64773.1| (hypothetical protein Csa_1G096080 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWRFWL 60

Query: 61 RRR 64
          RRR
Sbjct: 61 RRR 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LSK8_CUCSA2.0e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700209677|gb|KGN64773.1|2.8e-30100.00hypothetical protein Csa_1G096080 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU093593cucumber EST collection version 3.0transcribed_cluster
CU106337cucumber EST collection version 3.0transcribed_cluster
CU117312cucumber EST collection version 3.0transcribed_cluster
CU139989cucumber EST collection version 3.0transcribed_cluster
CU173212cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G096080.1Csa1G096080.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU093593CU093593transcribed_cluster
CU117312CU117312transcribed_cluster
CU139989CU139989transcribed_cluster
CU106337CU106337transcribed_cluster
CU173212CU173212transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None