Csa1G075010.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G075010.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 7712842 .. 7713240 (+)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

mRNA sequence

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Coding sequence (CDS)

ATGAGAATCCACAGGAAGAAGCCTCATATGAGTAGCACCACAAGCACTTGGCTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGAGACGATCCTAGTTTGGGTTCGATTGAAACACACGATAGGAAGATCAAAGTAGTTGACCATGGATTCGAGTTCAGTCCAACGTGTGGAGGTTCAAGTGTGAGCGATTATGGAGAGAGATCATCGGCATACATTGTAAGAAACAACAGTATAAAAAGAGGAAGCAAAAAGATATGGGAGGAAAAGGATGAATCAAGGTGGTCAGGGTGGAGGATTTTCTGGTTGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGGAAGCCCAGTGTGGTTCAACCACGACCCATTCAAGTGCCTTCCCCGTGA

Protein sequence

MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTCGGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPSVVQPRPIQVPSP*

Homology

[Close]

BLAST of Csa1G075010.1 vs. TrEMBL
Match: A0A0A0LXF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 8.7e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

[Close]

BLAST of Csa1G075010.1 vs. NCBI nr
Match: gi|700209600|gb|KGN64696.1| (hypothetical protein Csa_1G075010 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60
           MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120
           GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS
Sbjct: 61  GGSSVSDYGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRARKPS 120

Query: 121 VVQPRPIQVPSP 133
           VVQPRPIQVPSP
Sbjct: 121 VVQPRPIQVPSP 132

The following BLAST results are available for this feature:

BLAST of Csa1G075010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXF9_CUCSA	8.7e-73	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G075010 PE=4 SV=1	[more]

BLAST of Csa1G075010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209600\|gb\|KGN64696.1\|	1.2e-72	100.00	hypothetical protein Csa_1G075010 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G075010	Csa1G075010	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G075010.1	Csa1G075010.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G075010.1.cds1	Csa1G075010.1.cds1	CDS