Csa1G071820.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G071820.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribonuclease H; contains IPR012337 (Ribonuclease H-like domain)
Location	Chr1 : 7209172 .. 7209789 (+)
Sequence length	618

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

mRNA sequence

ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

Coding sequence (CDS)

ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

Protein sequence

MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRRR*

Homology

[Close]

BLAST of Csa1G071820.1 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-12
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 1


Query: 34  VAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELK 93
           + W  P  GW K+N DG+S+G   PG+AS GGVLRD    +  G++ +IGR  +  AEL 
Sbjct: 450 IGWVSPCVGWVKVNTDGASRGN--PGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELW 509

Query: 94  ALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFD-NCK 153
            +  GL    E     V +E D++ +V  L     +      S+L  +    L  D   +
Sbjct: 510 GVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTG--ISDSHPLSFLVRLCHGFLQKDWLVR 569

Query: 154 VSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRR 205
           + H+YRE N++AD  A+            +L P     ++R D  G    RR
Sbjct: 570 IVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRR 617

[Close]

BLAST of Csa1G071820.1 vs. TrEMBL
Match: A0A0A0LUF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071820 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 9.2e-114
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRRR 206
           RELPPLETLDMMRHDAEGKITFRRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRRR 205

[Close]

BLAST of Csa1G071820.1 vs. TrEMBL
Match: A0A0J8B4H6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015560 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.0e-57
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 1


Query: 19  LLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGY 78
           LL  + LHK PIP  VAW +P+ GWTKLNFDGSSKG+ G   ASIGGV RDH A+F+LGY
Sbjct: 26  LLLVKSLHKEPIP--VAWEKPKIGWTKLNFDGSSKGKTGE--ASIGGVFRDHNAKFMLGY 85

Query: 79  AESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYL 138
           AESIGR+ S++AEL AL +GLE++LENGW DVW+EGDAK LV I+ + R ++ +EA+ Y+
Sbjct: 86  AESIGRSDSTIAELAALLRGLEIILENGWDDVWLEGDAKALVNIITKRRSMRSLEAQKYI 145

Query: 139 RHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEG 198
            +I +++ + +N  +SHIYREGN+VAD+FA IGH+ +   IWR  PP E L +M  DAEG
Sbjct: 146 SYINAIIPELNNYTMSHIYREGNRVADKFAQIGHQLETPCIWRHAPPDEVLPIMHEDAEG 205

Query: 199 KITFRRR 206
           KI  RRR
Sbjct: 206 KIILRRR 208

[Close]

BLAST of Csa1G071820.1 vs. TrEMBL
Match: A0A061GEZ6_THECC (Polynucleotidyl transferase OS=Theobroma cacao GN=TCM_030014 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 111/198 (56.06%), Postives = 144/198 (72.73%), Query Frame = 1


Query: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62
           NIF+    Q +I   + L  R  HK  IP  V+W +PE GWTKLNFDGS KG    G AS
Sbjct: 7   NIFRC---QRLIQNPVQLLIRNWHKEAIP--VSWEKPEIGWTKLNFDGSCKGR--GGKAS 66

Query: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122
           IGGV R+HKA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW DVW+EGDAK LV++
Sbjct: 67  IGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWTDVWLEGDAKTLVDV 126

Query: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182
           + + R+VKC E + ++ HI  ++ + +NC V+HIYREGN+ AD+ A IGH+ KK +IW  
Sbjct: 127 IVQRRQVKCAELQRHVSHINLIIPELNNCIVTHIYREGNRAADKLAQIGHQLKKPQIWWH 186

Query: 183 LPPLETLDMMRHDAEGKI 201
           +PP E L ++  DAEG+I
Sbjct: 187 IPPNEVLPIVHEDAEGEI 197

[Close]

BLAST of Csa1G071820.1 vs. TrEMBL
Match: B9SFD3_RICCO (Nuclease, putative OS=Ricinus communis GN=RCOM_1096450 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.3e-55
Identity = 105/195 (53.85%), Postives = 144/195 (73.85%), Query Frame = 1


Query: 11  QIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDH 70
           Q ++   + +  +  H+ PIP  VAW +P+ GWTKLNFDGS KG  G G  SIGGV R+H
Sbjct: 11  QRVVQNPVRILIKNWHRDPIP--VAWEKPQVGWTKLNFDGSCKGREGKG--SIGGVFRNH 70

Query: 71  KAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVK 130
           KA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW +VW+EGDAK L+EI+ + R+V+
Sbjct: 71  KAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWSNVWLEGDAKTLLEIIVKRRKVR 130

Query: 131 CMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLD 190
           C + + ++  I  ++ + DNC VSH+YREGN+ AD+ A IGH+ +K +IW  +PP + L 
Sbjct: 131 CAQMQRHVSDINLIIPELDNCIVSHVYREGNRAADKLAQIGHQLQKPKIWWHIPPDDVLP 190

Query: 191 MMRHDAEGKITFRRR 206
           ++  DAEGKI FR+R
Sbjct: 191 IVHEDAEGKIVFRKR 201

[Close]

BLAST of Csa1G071820.1 vs. TrEMBL
Match: W9RDA6_9ROSA (Putative ribonuclease H protein OS=Morus notabilis GN=L484_002402 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.7e-55
Identity = 107/177 (60.45%), Postives = 135/177 (76.27%), Query Frame = 1


Query: 31  PIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMA 90
           P+PVAW +P  GWTKLNFDGSSKG  G   ASIGGVLR+HKA+FLLGYAESIGRA S++A
Sbjct: 38  PVPVAWEKPGIGWTKLNFDGSSKGRAGK--ASIGGVLRNHKAEFLLGYAESIGRASSTIA 97

Query: 91  ELKALTKGLELVLENGWKD--VWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDF 150
           EL AL +GLEL LENGW D  VW+EGDAK LVEI+ + R+VKC + + ++ HI S++ +F
Sbjct: 98  ELAALRRGLELALENGWGDQYVWLEGDAKTLVEIIVQRRKVKCAQVQKHVSHINSIIPEF 157

Query: 151 DNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRRR 206
           + C VSH+YRE N+ AD+ A +GH+  K ++W + PP E L  +  DAEGKI FRRR
Sbjct: 158 NGCIVSHVYREANRSADKLAKLGHQLDKPQVWWDNPPDEVLTFLVEDAEGKIIFRRR 212

[Close]

BLAST of Csa1G071820.1 vs. TAIR10
Match: AT5G42905.1 (AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-10
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 34  VAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELK 93
           + W  P  GW K+N DG+S+G   PG+AS GGVLRD +  +  G++ +IGR  +  AEL 
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGN--PGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELW 197

Query: 94  ALTKGLELVLENGWKDVWVEGDAKGLVEIL 124
            +  GL    E     V +E D++ +V  L
Sbjct: 198 GVYYGLYFAWEKKVPRVELEVDSEAIVGFL 225

[Close]

BLAST of Csa1G071820.1 vs. TAIR10
Match: AT1G24090.1 (AT1G24090.1 RNase H family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-08
Identity = 37/134 (27.61%), Postives = 65/134 (48.51%), Query Frame = 1


Query: 46  LNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLEN 105
           + FDG+SKG   PG++    VL+      +    + +G A ++ AE  AL  GL+  +E 
Sbjct: 219 IEFDGASKGN--PGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEK 278

Query: 106 GWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVAD 165
           G+K++ V+GD+K +   +    +V         +  K L     + ++SH+ R  N  AD
Sbjct: 279 GYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADAD 338

Query: 166 RFASIGHRCKKLEI 180
             A++  R  + E+
Sbjct: 339 EQANLAVRLPEGEV 350

[Close]

BLAST of Csa1G071820.1 vs. NCBI nr
Match: gi|700209523|gb|KGN64619.1| (hypothetical protein Csa_1G071820 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 1.3e-113
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRRR 206
           RELPPLETLDMMRHDAEGKITFRRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRRR 205

[Close]

BLAST of Csa1G071820.1 vs. NCBI nr
Match: gi|659067923|ref|XP_008441930.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.0e-95
Identity = 176/204 (86.27%), Postives = 187/204 (91.67%), Query Frame = 1


Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNI KS NYQ I SKSLL AAR+LHK+P PIPVAW RPE GWTKLNFDGSSKG+  PG+
Sbjct: 1   MFNILKSLNYQNIRSKSLL-AARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGL 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGD KGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILA+N+EVKC+E RSY R+IKSL+LD DNCKVSHIYREGNKVADRFASIGHR KKLEIW
Sbjct: 121 EILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRR 205
           RELPPLETLDMMRHDAEGKITFRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRR 203

[Close]

BLAST of Csa1G071820.1 vs. NCBI nr
Match: gi|645237032|ref|XP_008225019.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume])

HSP 1 Score: 233.0 bits (593), Expect = 4.6e-58
Identity = 107/182 (58.79%), Postives = 141/182 (77.47%), Query Frame = 1


Query: 23  RELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESI 82
           R LHK PIP  V W +P+ GWTKLNFDGSSKG+ G   ASIGG+ R+HKA FLLGYAE I
Sbjct: 22  RSLHKAPIP--VTWEKPKIGWTKLNFDGSSKGKAGK--ASIGGLFRNHKADFLLGYAEPI 81

Query: 83  GRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIK 142
           GRA S +AEL AL +GLELVLENGW DVW+EGDAK L++I+A+ R+++C EA+ ++ HI 
Sbjct: 82  GRANSIIAELAALRRGLELVLENGWSDVWLEGDAKTLLQIIAQRRQIRCAEAQRHISHIN 141

Query: 143 SLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITF 202
            ++ + +NC ++HIYREGN+ AD+FA +GH C K ++W+ +PP + L +M  DAEGKI F
Sbjct: 142 LIIPEINNCILTHIYREGNRAADKFAQMGHMCGKPQVWQHIPPNQVLSIMHEDAEGKIVF 199

Query: 203 RR 205
           R+
Sbjct: 202 RK 199

[Close]

BLAST of Csa1G071820.1 vs. NCBI nr
Match: gi|870840063|gb|KMS94758.1| (hypothetical protein BVRB_015560 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.8 bits (582), Expect = 8.7e-57
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 1


Query: 19  LLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGY 78
           LL  + LHK PIP  VAW +P+ GWTKLNFDGSSKG+ G   ASIGGV RDH A+F+LGY
Sbjct: 26  LLLVKSLHKEPIP--VAWEKPKIGWTKLNFDGSSKGKTGE--ASIGGVFRDHNAKFMLGY 85

Query: 79  AESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYL 138
           AESIGR+ S++AEL AL +GLE++LENGW DVW+EGDAK LV I+ + R ++ +EA+ Y+
Sbjct: 86  AESIGRSDSTIAELAALLRGLEIILENGWDDVWLEGDAKALVNIITKRRSMRSLEAQKYI 145

Query: 139 RHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEG 198
            +I +++ + +N  +SHIYREGN+VAD+FA IGH+ +   IWR  PP E L +M  DAEG
Sbjct: 146 SYINAIIPELNNYTMSHIYREGNRVADKFAQIGHQLETPCIWRHAPPDEVLPIMHEDAEG 205

Query: 199 KITFRRR 206
           KI  RRR
Sbjct: 206 KIILRRR 208

[Close]

BLAST of Csa1G071820.1 vs. NCBI nr
Match: gi|590625276|ref|XP_007025838.1| (Polynucleotidyl transferase [Theobroma cacao])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 111/198 (56.06%), Postives = 144/198 (72.73%), Query Frame = 1


Query: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62
           NIF+    Q +I   + L  R  HK  IP  V+W +PE GWTKLNFDGS KG    G AS
Sbjct: 7   NIFRC---QRLIQNPVQLLIRNWHKEAIP--VSWEKPEIGWTKLNFDGSCKGR--GGKAS 66

Query: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122
           IGGV R+HKA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW DVW+EGDAK LV++
Sbjct: 67  IGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWTDVWLEGDAKTLVDV 126

Query: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182
           + + R+VKC E + ++ HI  ++ + +NC V+HIYREGN+ AD+ A IGH+ KK +IW  
Sbjct: 127 IVQRRQVKCAELQRHVSHINLIIPELNNCIVTHIYREGNRAADKLAQIGHQLKKPQIWWH 186

Query: 183 LPPLETLDMMRHDAEGKI 201
           +PP E L ++  DAEG+I
Sbjct: 187 IPPNEVLPIVHEDAEGEI 197

The following BLAST results are available for this feature:

BLAST of Csa1G071820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	8.5e-12	31.40	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of Csa1G071820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUF5_CUCSA	9.2e-114	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071820 PE=4 SV=1	[more]
A0A0J8B4H6_BETVU	6.0e-57	58.82	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015560 PE=4 SV=...	[more]
A0A061GEZ6_THECC	1.5e-55	56.06	Polynucleotidyl transferase OS=Theobroma cacao GN=TCM_030014 PE=4 SV=1	[more]
B9SFD3_RICCO	4.3e-55	53.85	Nuclease, putative OS=Ricinus communis GN=RCOM_1096450 PE=4 SV=1	[more]
W9RDA6_9ROSA	5.7e-55	60.45	Putative ribonuclease H protein OS=Morus notabilis GN=L484_002402 PE=4 SV=1	[more]

BLAST of Csa1G071820.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42905.1	6.5e-10	38.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G24090.1	2.7e-08	27.61	RNase H family protein	[more]

BLAST of Csa1G071820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209523\|gb\|KGN64619.1\|	1.3e-113	100.00	hypothetical protein Csa_1G071820 [Cucumis sativus]	[more]
gi\|659067923\|ref\|XP_008441930.1\|	8.0e-95	86.27	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|645237032\|ref\|XP_008225019.1\|	4.6e-58	58.79	PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]	[more]
gi\|870840063\|gb\|KMS94758.1\|	8.7e-57	58.82	hypothetical protein BVRB_015560 [Beta vulgaris subsp. vulgaris]	[more]
gi\|590625276\|ref\|XP_007025838.1\|	2.1e-55	56.06	Polynucleotidyl transferase [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002156	RNaseH_domain
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004523	RNA-DNA hybrid ribonuclease activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G071820	Csa1G071820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G071820.1	Csa1G071820.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G071820.1.cds1	Csa1G071820.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PROFILE	PS50879	RNASE_H	coord: 40..173 score: 11
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 48..175 score: 1.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 41..168 score: 2.28
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 8..205 score: 2.4
None	No IPR available	PANTHER	PTHR33033:SF17	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 8..205 score: 2.4
None	No IPR available	PFAM	PF13456	RVT_3	coord: 47..169 score: 2.4