Csa1G071820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G071820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRibonuclease H; contains IPR012337 (Ribonuclease H-like domain)
LocationChr1 : 7209172 .. 7209789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

mRNA sequence

ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

Coding sequence (CDS)

ATGTTTAACATTTTCAAATCCTCCAATTACCAAATCATCATTTCAAAATCATTATTATTAGCAGCAAGAGAATTGCACAAACGACCGATACCAATTCCAGTGGCATGGACAAGGCCAGAATTTGGGTGGACAAAGCTGAATTTCGACGGCTCTTCAAAAGGGGAAATAGGACCCGGTGTGGCCAGCATTGGGGGTGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGTCCATAGGCAGAGCCTATAGCTCCATGGCTGAACTTAAAGCACTTACCAAAGGCTTGGAATTGGTCCTTGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGCTAAGGGATTGGTGGAAATACTAGCTGAGAATAGAGAGGTTAAATGTATGGAAGCTCGAAGTTATTTGAGGCACATAAAATCTTTATTACTTGATTTTGATAATTGTAAAGTTAGTCATATTTATAGGGAAGGTAATAAAGTTGCTGATAGATTTGCTTCCATTGGTCATCGTTGTAAGAAGCTTGAAATTTGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGAAGGTAA

Protein sequence

MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRRR*
Homology
[Close]
BLAST of Csa1G071820 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-12
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 1 

Query: 34  VAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELK 93
           + W  P  GW K+N DG+S+G   PG+AS GGVLRD    +  G++ +IGR  +  AEL 
Sbjct: 450 IGWVSPCVGWVKVNTDGASRGN--PGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELW 509

Query: 94  ALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFD-NCK 153
            +  GL    E     V +E D++ +V  L     +      S+L  +    L  D   +
Sbjct: 510 GVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTG--ISDSHPLSFLVRLCHGFLQKDWLVR 569

Query: 154 VSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRR 205
           + H+YRE N++AD  A+            +L P     ++R D  G    RR
Sbjct: 570 IVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRR 617

[Close]
BLAST of Csa1G071820 vs. TrEMBL
Match: A0A0A0LUF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071820 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 9.2e-114
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRRR 206
           RELPPLETLDMMRHDAEGKITFRRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRRR 205

[Close]
BLAST of Csa1G071820 vs. TrEMBL
Match: A0A0J8B4H6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015560 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.0e-57
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 1 

Query: 19  LLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGY 78
           LL  + LHK PIP  VAW +P+ GWTKLNFDGSSKG+ G   ASIGGV RDH A+F+LGY
Sbjct: 26  LLLVKSLHKEPIP--VAWEKPKIGWTKLNFDGSSKGKTGE--ASIGGVFRDHNAKFMLGY 85

Query: 79  AESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYL 138
           AESIGR+ S++AEL AL +GLE++LENGW DVW+EGDAK LV I+ + R ++ +EA+ Y+
Sbjct: 86  AESIGRSDSTIAELAALLRGLEIILENGWDDVWLEGDAKALVNIITKRRSMRSLEAQKYI 145

Query: 139 RHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEG 198
            +I +++ + +N  +SHIYREGN+VAD+FA IGH+ +   IWR  PP E L +M  DAEG
Sbjct: 146 SYINAIIPELNNYTMSHIYREGNRVADKFAQIGHQLETPCIWRHAPPDEVLPIMHEDAEG 205

Query: 199 KITFRRR 206
           KI  RRR
Sbjct: 206 KIILRRR 208

[Close]
BLAST of Csa1G071820 vs. TrEMBL
Match: A0A061GEZ6_THECC (Polynucleotidyl transferase OS=Theobroma cacao GN=TCM_030014 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 111/198 (56.06%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62
           NIF+    Q +I   + L  R  HK  IP  V+W +PE GWTKLNFDGS KG    G AS
Sbjct: 7   NIFRC---QRLIQNPVQLLIRNWHKEAIP--VSWEKPEIGWTKLNFDGSCKGR--GGKAS 66

Query: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122
           IGGV R+HKA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW DVW+EGDAK LV++
Sbjct: 67  IGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWTDVWLEGDAKTLVDV 126

Query: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182
           + + R+VKC E + ++ HI  ++ + +NC V+HIYREGN+ AD+ A IGH+ KK +IW  
Sbjct: 127 IVQRRQVKCAELQRHVSHINLIIPELNNCIVTHIYREGNRAADKLAQIGHQLKKPQIWWH 186

Query: 183 LPPLETLDMMRHDAEGKI 201
           +PP E L ++  DAEG+I
Sbjct: 187 IPPNEVLPIVHEDAEGEI 197

[Close]
BLAST of Csa1G071820 vs. TrEMBL
Match: B9SFD3_RICCO (Nuclease, putative OS=Ricinus communis GN=RCOM_1096450 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.3e-55
Identity = 105/195 (53.85%), Postives = 144/195 (73.85%), Query Frame = 1 

Query: 11  QIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDH 70
           Q ++   + +  +  H+ PIP  VAW +P+ GWTKLNFDGS KG  G G  SIGGV R+H
Sbjct: 11  QRVVQNPVRILIKNWHRDPIP--VAWEKPQVGWTKLNFDGSCKGREGKG--SIGGVFRNH 70

Query: 71  KAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVK 130
           KA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW +VW+EGDAK L+EI+ + R+V+
Sbjct: 71  KAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWSNVWLEGDAKTLLEIIVKRRKVR 130

Query: 131 CMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLD 190
           C + + ++  I  ++ + DNC VSH+YREGN+ AD+ A IGH+ +K +IW  +PP + L 
Sbjct: 131 CAQMQRHVSDINLIIPELDNCIVSHVYREGNRAADKLAQIGHQLQKPKIWWHIPPDDVLP 190

Query: 191 MMRHDAEGKITFRRR 206
           ++  DAEGKI FR+R
Sbjct: 191 IVHEDAEGKIVFRKR 201

[Close]
BLAST of Csa1G071820 vs. TrEMBL
Match: W9RDA6_9ROSA (Putative ribonuclease H protein OS=Morus notabilis GN=L484_002402 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.7e-55
Identity = 107/177 (60.45%), Postives = 135/177 (76.27%), Query Frame = 1 

Query: 31  PIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMA 90
           P+PVAW +P  GWTKLNFDGSSKG  G   ASIGGVLR+HKA+FLLGYAESIGRA S++A
Sbjct: 38  PVPVAWEKPGIGWTKLNFDGSSKGRAGK--ASIGGVLRNHKAEFLLGYAESIGRASSTIA 97

Query: 91  ELKALTKGLELVLENGWKD--VWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDF 150
           EL AL +GLEL LENGW D  VW+EGDAK LVEI+ + R+VKC + + ++ HI S++ +F
Sbjct: 98  ELAALRRGLELALENGWGDQYVWLEGDAKTLVEIIVQRRKVKCAQVQKHVSHINSIIPEF 157

Query: 151 DNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITFRRR 206
           + C VSH+YRE N+ AD+ A +GH+  K ++W + PP E L  +  DAEGKI FRRR
Sbjct: 158 NGCIVSHVYREANRSADKLAKLGHQLDKPQVWWDNPPDEVLTFLVEDAEGKIIFRRR 212

[Close]
BLAST of Csa1G071820 vs. TAIR10
Match: AT5G42905.1 (AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-10
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1 

Query: 34  VAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELK 93
           + W  P  GW K+N DG+S+G   PG+AS GGVLRD +  +  G++ +IGR  +  AEL 
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGN--PGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELW 197

Query: 94  ALTKGLELVLENGWKDVWVEGDAKGLVEIL 124
            +  GL    E     V +E D++ +V  L
Sbjct: 198 GVYYGLYFAWEKKVPRVELEVDSEAIVGFL 225

[Close]
BLAST of Csa1G071820 vs. TAIR10
Match: AT1G24090.1 (AT1G24090.1 RNase H family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-08
Identity = 37/134 (27.61%), Postives = 65/134 (48.51%), Query Frame = 1 

Query: 46  LNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLEN 105
           + FDG+SKG   PG++    VL+      +    + +G A ++ AE  AL  GL+  +E 
Sbjct: 219 IEFDGASKGN--PGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEK 278

Query: 106 GWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVAD 165
           G+K++ V+GD+K +   +    +V         +  K L     + ++SH+ R  N  AD
Sbjct: 279 GYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADAD 338

Query: 166 RFASIGHRCKKLEI 180
             A++  R  + E+
Sbjct: 339 EQANLAVRLPEGEV 350

[Close]
BLAST of Csa1G071820 vs. NCBI nr
Match: gi|700209523|gb|KGN64619.1| (hypothetical protein Csa_1G071820 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 1.3e-113
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRRR 206
           RELPPLETLDMMRHDAEGKITFRRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRRR 205

[Close]
BLAST of Csa1G071820 vs. NCBI nr
Match: gi|659067923|ref|XP_008441930.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.0e-95
Identity = 176/204 (86.27%), Postives = 187/204 (91.67%), Query Frame = 1 

Query: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60
           MFNI KS NYQ I SKSLL AAR+LHK+P PIPVAW RPE GWTKLNFDGSSKG+  PG+
Sbjct: 1   MFNILKSLNYQNIRSKSLL-AARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGL 60

Query: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDHKAQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGD KGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLV 120

Query: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180
           EILA+N+EVKC+E RSY R+IKSL+LD DNCKVSHIYREGNKVADRFASIGHR KKLEIW
Sbjct: 121 EILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRR 205
           RELPPLETLDMMRHDAEGKITFRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRR 203

[Close]
BLAST of Csa1G071820 vs. NCBI nr
Match: gi|645237032|ref|XP_008225019.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume])

HSP 1 Score: 233.0 bits (593), Expect = 4.6e-58
Identity = 107/182 (58.79%), Postives = 141/182 (77.47%), Query Frame = 1 

Query: 23  RELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESI 82
           R LHK PIP  V W +P+ GWTKLNFDGSSKG+ G   ASIGG+ R+HKA FLLGYAE I
Sbjct: 22  RSLHKAPIP--VTWEKPKIGWTKLNFDGSSKGKAGK--ASIGGLFRNHKADFLLGYAEPI 81

Query: 83  GRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYLRHIK 142
           GRA S +AEL AL +GLELVLENGW DVW+EGDAK L++I+A+ R+++C EA+ ++ HI 
Sbjct: 82  GRANSIIAELAALRRGLELVLENGWSDVWLEGDAKTLLQIIAQRRQIRCAEAQRHISHIN 141

Query: 143 SLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEGKITF 202
            ++ + +NC ++HIYREGN+ AD+FA +GH C K ++W+ +PP + L +M  DAEGKI F
Sbjct: 142 LIIPEINNCILTHIYREGNRAADKFAQMGHMCGKPQVWQHIPPNQVLSIMHEDAEGKIVF 199

Query: 203 RR 205
           R+
Sbjct: 202 RK 199

[Close]
BLAST of Csa1G071820 vs. NCBI nr
Match: gi|870840063|gb|KMS94758.1| (hypothetical protein BVRB_015560 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.8 bits (582), Expect = 8.7e-57
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 1 

Query: 19  LLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGY 78
           LL  + LHK PIP  VAW +P+ GWTKLNFDGSSKG+ G   ASIGGV RDH A+F+LGY
Sbjct: 26  LLLVKSLHKEPIP--VAWEKPKIGWTKLNFDGSSKGKTGE--ASIGGVFRDHNAKFMLGY 85

Query: 79  AESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEILAENREVKCMEARSYL 138
           AESIGR+ S++AEL AL +GLE++LENGW DVW+EGDAK LV I+ + R ++ +EA+ Y+
Sbjct: 86  AESIGRSDSTIAELAALLRGLEIILENGWDDVWLEGDAKALVNIITKRRSMRSLEAQKYI 145

Query: 139 RHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRELPPLETLDMMRHDAEG 198
            +I +++ + +N  +SHIYREGN+VAD+FA IGH+ +   IWR  PP E L +M  DAEG
Sbjct: 146 SYINAIIPELNNYTMSHIYREGNRVADKFAQIGHQLETPCIWRHAPPDEVLPIMHEDAEG 205

Query: 199 KITFRRR 206
           KI  RRR
Sbjct: 206 KIILRRR 208

[Close]
BLAST of Csa1G071820 vs. NCBI nr
Match: gi|590625276|ref|XP_007025838.1| (Polynucleotidyl transferase [Theobroma cacao])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 111/198 (56.06%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62
           NIF+    Q +I   + L  R  HK  IP  V+W +PE GWTKLNFDGS KG    G AS
Sbjct: 7   NIFRC---QRLIQNPVQLLIRNWHKEAIP--VSWEKPEIGWTKLNFDGSCKGR--GGKAS 66

Query: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122
           IGGV R+HKA+FLLGYAESIGR+ S++AEL AL +GLELVLENGW DVW+EGDAK LV++
Sbjct: 67  IGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWTDVWLEGDAKTLVDV 126

Query: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182
           + + R+VKC E + ++ HI  ++ + +NC V+HIYREGN+ AD+ A IGH+ KK +IW  
Sbjct: 127 IVQRRQVKCAELQRHVSHINLIIPELNNCIVTHIYREGNRAADKLAQIGHQLKKPQIWWH 186

Query: 183 LPPLETLDMMRHDAEGKI 201
           +PP E L ++  DAEG+I
Sbjct: 187 IPPNEVLPIVHEDAEGEI 197

The following BLAST results are available for this feature:
BLAST of Csa1G071820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH8.5e-1231.40Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of Csa1G071820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUF5_CUCSA9.2e-114100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071820 PE=4 SV=1[more]
A0A0J8B4H6_BETVU6.0e-5758.82Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015560 PE=4 SV=... [more]
A0A061GEZ6_THECC1.5e-5556.06Polynucleotidyl transferase OS=Theobroma cacao GN=TCM_030014 PE=4 SV=1[more]
B9SFD3_RICCO4.3e-5553.85Nuclease, putative OS=Ricinus communis GN=RCOM_1096450 PE=4 SV=1[more]
W9RDA6_9ROSA5.7e-5560.45Putative ribonuclease H protein OS=Morus notabilis GN=L484_002402 PE=4 SV=1[more]
BLAST of Csa1G071820 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42905.16.5e-1038.89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G24090.12.7e-0827.61 RNase H family protein[more]
BLAST of Csa1G071820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209523|gb|KGN64619.1|1.3e-113100.00hypothetical protein Csa_1G071820 [Cucumis sativus][more]
gi|659067923|ref|XP_008441930.1|8.0e-9586.27PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|645237032|ref|XP_008225019.1|4.6e-5858.79PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume][more]
gi|870840063|gb|KMS94758.1|8.7e-5758.82hypothetical protein BVRB_015560 [Beta vulgaris subsp. vulgaris][more]
gi|590625276|ref|XP_007025838.1|2.1e-5556.06Polynucleotidyl transferase [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G071820.1Csa1G071820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPROFILEPS50879RNASE_Hcoord: 40..173
score: 11
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 48..175
score: 1.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 41..168
score: 2.28
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 8..205
score: 2.4
NoneNo IPR availablePANTHERPTHR33033:SF17POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 8..205
score: 2.4
NoneNo IPR availablePFAMPF13456RVT_3coord: 47..169
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G071820MELO3C002549Melon (DHL92) v3.5.1cumeB027
Csa1G071820ClCG03G005440Watermelon (Charleston Gray)cuwcgB035
Csa1G071820Lsi02G006960Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G071820MELO3C002549.2Melon (DHL92) v3.6.1cumedB022
Csa1G071820Cla97C03G056730Watermelon (97103) v2cuwmbB032
Csa1G071820Bhi08G001544Wax gourdcuwgoB035
Csa1G071820CSPI01G11560Wild cucumber (PI 183967)cpicuB000
Csa1G071820Cucsa.126200Cucumber (Gy14) v1cgycuB170
Csa1G071820CmaCh13G006850Cucurbita maxima (Rimu)cmacuB218
Csa1G071820CmoCh13G007050Cucurbita moschata (Rifu)cmocuB203
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G071820Melon (DHL92) v3.5.1cumeB040
Csa1G071820Melon (DHL92) v3.5.1cumeB077
Csa1G071820Melon (DHL92) v3.5.1cumeB083
Csa1G071820Watermelon (Charleston Gray)cuwcgB012
Csa1G071820Watermelon (Charleston Gray)cuwcgB032
Csa1G071820Watermelon (97103) v1cuwmB008
Csa1G071820Watermelon (97103) v1cuwmB043
Csa1G071820Watermelon (97103) v1cuwmB067
Csa1G071820Cucurbita pepo (Zucchini)cpecuB029
Csa1G071820Cucurbita pepo (Zucchini)cpecuB057
Csa1G071820Cucurbita pepo (Zucchini)cpecuB203
Csa1G071820Cucurbita pepo (Zucchini)cpecuB474
Csa1G071820Cucurbita pepo (Zucchini)cpecuB506
Csa1G071820Cucurbita pepo (Zucchini)cpecuB770
Csa1G071820Bottle gourd (USVL1VR-Ls)culsiB012
Csa1G071820Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G071820Bottle gourd (USVL1VR-Ls)culsiB050
Csa1G071820Cucumber (Gy14) v2cgybcuB001
Csa1G071820Cucumber (Gy14) v2cgybcuB095
Csa1G071820Cucumber (Gy14) v2cgybcuB239
Csa1G071820Melon (DHL92) v3.6.1cumedB072
Csa1G071820Melon (DHL92) v3.6.1cumedB077
Csa1G071820Silver-seed gourdcarcuB0163
Csa1G071820Silver-seed gourdcarcuB0661
Csa1G071820Silver-seed gourdcarcuB0888
Csa1G071820Silver-seed gourdcarcuB0916
Csa1G071820Silver-seed gourdcarcuB0963
Csa1G071820Watermelon (97103) v2cuwmbB000
Csa1G071820Watermelon (97103) v2cuwmbB016
Csa1G071820Watermelon (97103) v2cuwmbB029
Csa1G071820Wax gourdcuwgoB023
Csa1G071820Cucumber (Chinese Long) v2cucuB015
Csa1G071820Cucumber (Chinese Long) v2cucuB019
Csa1G071820Cucumber (Chinese Long) v2cucuB035
Csa1G071820Cucumber (Chinese Long) v2cucuB044
Csa1G071820Cucumber (Gy14) v1cgycuB070
Csa1G071820Cucumber (Gy14) v1cgycuB015
Csa1G071820Cucurbita maxima (Rimu)cmacuB010
Csa1G071820Cucurbita maxima (Rimu)cmacuB318
Csa1G071820Cucurbita maxima (Rimu)cmacuB391
Csa1G071820Cucurbita maxima (Rimu)cmacuB649
Csa1G071820Cucurbita maxima (Rimu)cmacuB848
Csa1G071820Cucurbita moschata (Rifu)cmocuB000
Csa1G071820Cucurbita moschata (Rifu)cmocuB306
Csa1G071820Cucurbita moschata (Rifu)cmocuB380
Csa1G071820Cucurbita moschata (Rifu)cmocuB419
Csa1G071820Cucurbita moschata (Rifu)cmocuB491
Csa1G071820Cucurbita moschata (Rifu)cmocuB637