Csa1G060770.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G060770.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 6541800 .. 6542483 (-)
Sequence length	411

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAG

mRNA sequence

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Coding sequence (CDS)

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Protein sequence

MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKIKK*

Homology

[Close]

BLAST of Csa1G060770.1 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.2e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of Csa1G060770.1 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of Csa1G060770.1 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-09
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]

BLAST of Csa1G060770.1 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150

[Close]

BLAST of Csa1G060770.1 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of Csa1G060770.1 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of Csa1G060770.1 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]

BLAST of Csa1G060770.1 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150

HSP 2 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 30  SVSKKSNENQNLKVEGSSSKGKAT------DDLIVKMEETVEKMKSVWCRKDNLVSSPLL 89
           S   +S E +  K++  + +   +      DDLI +M+E V  +KS    +  LV+SPLL
Sbjct: 241 SRDNRSEEKRETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLKS----EGRLVNSPLL 300

Query: 90  ACFVAAQTLLVVCTIQLFYTSTG-----DHQRSEVSVKDSSTTNEAADRSVEENKIKK 137
            CFV+AQTLL+ C  +L   S G      HQ SE+SV  SSTT    D + + N  KK
Sbjct: 301 GCFVSAQTLLMACATELLSISIGKSKALHHQGSEISVNYSSTTTN--DTAADGNGEKK 352

[Close]

BLAST of Csa1G060770.1 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 45.8 bits (107), Expect = 6.9e-02
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1


Query: 28  LISVSKKSNENQNLKV-EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACF 87
           L   S+  + ++ LK+ EG SS     DDLI ++EE V+K+K V   K + V+ PLLA F
Sbjct: 124 LDDTSEHEHRDKRLKLKEGWSSGVDRLDDLIERVEELVKKLKGV-DGKKDSVNGPLLASF 183

Query: 88  VAAQTLLVVCTIQLFYTSTGDH--QRSEVSVKDSSTTNEAADRSVEEN 133
           ++A T L   T QL   ST +     S++S  ++S  N        EN
Sbjct: 184 MSAFTQLENWTEQLLSASTVNEPSSPSKLSASNNSDPNIEVGPDTPEN 230

HSP 2 Score: 38.9 bits (89), Expect = 8.5e+00
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 34  KSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLL 93
           + +  Q+  +E  SS+  +   LIVK+EETV+KMKSV  +K   +S  LLA F +A   L
Sbjct: 3   RHDTTQHNTMEDWSSRNVSVHFLIVKLEETVKKMKSVSGKK--AISDCLLAWFSSAYNQL 62

Query: 94  VVCTIQLF 102
              T ++F
Sbjct: 63  EARTNEVF 68

The following BLAST results are available for this feature:

BLAST of Csa1G060770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRJ2_CUCSA	9.2e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1	[more]
A0A0A0LX14_CUCSA	1.7e-10	50.00	p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	7.0e-09	40.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	2.0e-03	43.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]

BLAST of Csa1G060770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209404\|gb\|KGN64500.1\|	1.3e-69	100.00	hypothetical protein Csa_1G060770 [Cucumis sativus]	[more]
gi\|700209400\|gb\|KGN64496.1\|	2.4e-10	50.00	p55 [Cucumis sativus]	[more]
gi\|700209403\|gb\|KGN64499.1\|	1.0e-08	40.87	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]
gi\|700209403\|gb\|KGN64499.1\|	2.8e-03	43.94	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]
gi\|659067697\|ref\|XP_008440827.1\|	6.9e-02	36.11	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G060770	Csa1G060770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G060770.1	Csa1G060770.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G060770.1.utr3p1	Csa1G060770.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G060770.1.cds1	Csa1G060770.1.cds1	CDS