Csa1G060770 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G060770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6541800 .. 6542483 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAG

mRNA sequence

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Coding sequence (CDS)

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Protein sequence

MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKIKK*
Homology
[Close]
BLAST of Csa1G060770 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.2e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]
BLAST of Csa1G060770 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]
BLAST of Csa1G060770 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-09
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]
BLAST of Csa1G060770 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 

Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150

[Close]
BLAST of Csa1G060770 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]
BLAST of Csa1G060770 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]
BLAST of Csa1G060770 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]
BLAST of Csa1G060770 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 

Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150


HSP 2 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1 

Query: 30  SVSKKSNENQNLKVEGSSSKGKAT------DDLIVKMEETVEKMKSVWCRKDNLVSSPLL 89
           S   +S E +  K++  + +   +      DDLI +M+E V  +KS    +  LV+SPLL
Sbjct: 241 SRDNRSEEKRETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLKS----EGRLVNSPLL 300

Query: 90  ACFVAAQTLLVVCTIQLFYTSTG-----DHQRSEVSVKDSSTTNEAADRSVEENKIKK 137
            CFV+AQTLL+ C  +L   S G      HQ SE+SV  SSTT    D + + N  KK
Sbjct: 301 GCFVSAQTLLMACATELLSISIGKSKALHHQGSEISVNYSSTTTN--DTAADGNGEKK 352

[Close]
BLAST of Csa1G060770 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 45.8 bits (107), Expect = 6.9e-02
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1 

Query: 28  LISVSKKSNENQNLKV-EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACF 87
           L   S+  + ++ LK+ EG SS     DDLI ++EE V+K+K V   K + V+ PLLA F
Sbjct: 124 LDDTSEHEHRDKRLKLKEGWSSGVDRLDDLIERVEELVKKLKGV-DGKKDSVNGPLLASF 183

Query: 88  VAAQTLLVVCTIQLFYTSTGDH--QRSEVSVKDSSTTNEAADRSVEEN 133
           ++A T L   T QL   ST +     S++S  ++S  N        EN
Sbjct: 184 MSAFTQLENWTEQLLSASTVNEPSSPSKLSASNNSDPNIEVGPDTPEN 230


HSP 2 Score: 38.9 bits (89), Expect = 8.5e+00
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 

Query: 34  KSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLL 93
           + +  Q+  +E  SS+  +   LIVK+EETV+KMKSV  +K   +S  LLA F +A   L
Sbjct: 3   RHDTTQHNTMEDWSSRNVSVHFLIVKLEETVKKMKSVSGKK--AISDCLLAWFSSAYNQL 62

Query: 94  VVCTIQLF 102
              T ++F
Sbjct: 63  EARTNEVF 68

The following BLAST results are available for this feature:
BLAST of Csa1G060770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRJ2_CUCSA9.2e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
A0A0A0LX14_CUCSA1.7e-1050.00p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1[more]
A0A0A0LU71_CUCSA7.0e-0940.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
A0A0A0LU71_CUCSA2.0e-0343.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
BLAST of Csa1G060770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209404|gb|KGN64500.1|1.3e-69100.00hypothetical protein Csa_1G060770 [Cucumis sativus][more]
gi|700209400|gb|KGN64496.1|2.4e-1050.00p55 [Cucumis sativus][more]
gi|700209403|gb|KGN64499.1|1.0e-0840.87hypothetical protein Csa_1G060760 [Cucumis sativus][more]
gi|700209403|gb|KGN64499.1|2.8e-0343.94hypothetical protein Csa_1G060760 [Cucumis sativus][more]
gi|659067697|ref|XP_008440827.1|6.9e-0236.11PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091521cucumber EST collection version 3.0transcribed_cluster
CU104527cucumber EST collection version 3.0transcribed_cluster
CU104872cucumber EST collection version 3.0transcribed_cluster
CU106987cucumber EST collection version 3.0transcribed_cluster
CU135103cucumber EST collection version 3.0transcribed_cluster
CU144463cucumber EST collection version 3.0transcribed_cluster
CU154165cucumber EST collection version 3.0transcribed_cluster
CU170787cucumber EST collection version 3.0transcribed_cluster
CU172444cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G060770.1Csa1G060770.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104872CU104872transcribed_cluster
CU104527CU104527transcribed_cluster
CU106987CU106987transcribed_cluster
CU091521CU091521transcribed_cluster
CU172444CU172444transcribed_cluster
CU144463CU144463transcribed_cluster
CU154165CU154165transcribed_cluster
CU170787CU170787transcribed_cluster
CU135103CU135103transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G060770CSPI01G10470Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G060770Cucurbita pepo (Zucchini)cpecuB029
Csa1G060770Cucurbita pepo (Zucchini)cpecuB055
Csa1G060770Cucurbita pepo (Zucchini)cpecuB474
Csa1G060770Cucurbita pepo (Zucchini)cpecuB506
Csa1G060770Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G060770Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G060770Bottle gourd (USVL1VR-Ls)culsiB040
Csa1G060770Cucumber (Gy14) v2cgybcuB001
Csa1G060770Cucumber (Gy14) v2cgybcuB239
Csa1G060770Melon (DHL92) v3.6.1cumedB022
Csa1G060770Melon (DHL92) v3.6.1cumedB077
Csa1G060770Silver-seed gourdcarcuB0523
Csa1G060770Silver-seed gourdcarcuB0661
Csa1G060770Silver-seed gourdcarcuB0945
Csa1G060770Silver-seed gourdcarcuB1020
Csa1G060770Watermelon (97103) v2cuwmbB000
Csa1G060770Watermelon (97103) v2cuwmbB032
Csa1G060770Wax gourdcuwgoB033
Csa1G060770Cucumber (Chinese Long) v2cucuB035
Csa1G060770Cucumber (Gy14) v1cgycuB015
Csa1G060770Cucumber (Gy14) v1cgycuB087
Csa1G060770Cucurbita maxima (Rimu)cmacuB218
Csa1G060770Cucurbita maxima (Rimu)cmacuB397
Csa1G060770Cucurbita maxima (Rimu)cmacuB649
Csa1G060770Cucurbita maxima (Rimu)cmacuB848
Csa1G060770Cucurbita moschata (Rifu)cmocuB203
Csa1G060770Cucurbita moschata (Rifu)cmocuB380
Csa1G060770Cucurbita moschata (Rifu)cmocuB637
Csa1G060770Cucurbita moschata (Rifu)cmocuB835
Csa1G060770Melon (DHL92) v3.5.1cumeB024
Csa1G060770Melon (DHL92) v3.5.1cumeB027
Csa1G060770Melon (DHL92) v3.5.1cumeB083
Csa1G060770Watermelon (Charleston Gray)cuwcgB012
Csa1G060770Watermelon (Charleston Gray)cuwcgB035
Csa1G060770Watermelon (97103) v1cuwmB008
Csa1G060770Watermelon (97103) v1cuwmB043