Csa1G046200.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G046200.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5389311 .. 5390518 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTGTTTAGGCTTCATGAAGGTATCAATGAAGAAAGAAAAATGGTGTCCAATGAGATTGAGATCTACTTGTCTTGCCCTGTCAGTGGTCAACACTTCCTTTCACCAGGCCTCTAATTATGTCTTGTTTAACTTTGCTTTAATGCACAGTAATCAGATCACAGAAAGATAGTGTTCATGTATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTAAACTTGATTAGAGGATTACAAAGCAAGAACTTTGTAGAACTTCTGGGATTTATATTCTCAAGACGAGTACATTAAGAACTTCAAAGTATGAACTCAGTTGTATCATCTTTGATCTAGTGTTTTATTCTTTATATCTGTTTATAAATTTTTCGAGCAACGGCCTGTTTCCTTTTTTATTAACATTCAAGTGACTCTACATTATGCTAGGGTTGTGGTTCTTGAGATCGTATGTGGAAATGATACTTTTTTCATGCGAGGCTCAAATTCAGCTCTGCACATTGTGATTCTCTAAGATTTTACATGAATGATATACGTTAGTTTGCTCAGTACTATTTGTATTGTACTCTACGTTTCTCCAAGGACACGATTTTCATTGTTCTTTTAACAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGAACGGAAGATATCAAGGGCACCTGAAGTTTATAATTTTGGAGGAAAATGTTTGTGTAAAGTATAGAAAAGCCGGTCAATGAACTCGCACTTGAAGGTGATTGGAATGAGAAAATATCTAAAAAGAATTTGGTTTCCACTCAAACTCCTTGTGGGTCCTAAAGCTGCTGTGAAATGGGATGATGAAACTCACACAGTTCAAACTTTTGTTGAACTCGTAGTTGCACCATGTTCTATTCCACTTCTGATCTCTTTGTAAATTGAAGATGATTGCTTAAAAACTGAAGTTCAATCAAATTAAAGTATTCCATACTCAATCAAGTACCCAGAACTAGAATGTTGTTAATAATGATTTAAAGCAAAAATCTAAACTTGTAAGAGAACTAATCAGAACTTAAATGTTTTTTCAAAT

mRNA sequence

ATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGA

Coding sequence (CDS)

ATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGA

Protein sequence

MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHKACNFYIKSTSLRRIQ*
Homology
[Close]
BLAST of Csa1G046200.1 vs. TrEMBL
Match: A0A0A0LR94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046200 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.8e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60
          MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK
Sbjct: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60

Query: 61 ACNFYIKSTSLRRIQ 76
          ACNFYIKSTSLRRIQ
Sbjct: 61 ACNFYIKSTSLRRIQ 75

[Close]
BLAST of Csa1G046200.1 vs. NCBI nr
Match: gi|700209227|gb|KGN64323.1| (hypothetical protein Csa_1G046200 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60
          MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK
Sbjct: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60

Query: 61 ACNFYIKSTSLRRIQ 76
          ACNFYIKSTSLRRIQ
Sbjct: 61 ACNFYIKSTSLRRIQ 75

The following BLAST results are available for this feature:
BLAST of Csa1G046200.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR94_CUCSA8.8e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046200 PE=4 SV=1[more]
BLAST of Csa1G046200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209227|gb|KGN64323.1|1.3e-37100.00hypothetical protein Csa_1G046200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G046200Csa1G046200gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G046200.1Csa1G046200.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G046200.1.utr5p1Csa1G046200.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G046200.1.cds1Csa1G046200.1.cds1CDS
Csa1G046200.1.cds2Csa1G046200.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G046200.1.utr3p1Csa1G046200.1.utr3p1three_prime_UTR