Csa1G046200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G046200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5389311 .. 5390518 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTGTTTAGGCTTCATGAAGGTATCAATGAAGAAAGAAAAATGGTGTCCAATGAGATTGAGATCTACTTGTCTTGCCCTGTCAGTGGTCAACACTTCCTTTCACCAGGCCTCTAATTATGTCTTGTTTAACTTTGCTTTAATGCACAGTAATCAGATCACAGAAAGATAGTGTTCATGTATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTAAACTTGATTAGAGGATTACAAAGCAAGAACTTTGTAGAACTTCTGGGATTTATATTCTCAAGACGAGTACATTAAGAACTTCAAAGTATGAACTCAGTTGTATCATCTTTGATCTAGTGTTTTATTCTTTATATCTGTTTATAAATTTTTCGAGCAACGGCCTGTTTCCTTTTTTATTAACATTCAAGTGACTCTACATTATGCTAGGGTTGTGGTTCTTGAGATCGTATGTGGAAATGATACTTTTTTCATGCGAGGCTCAAATTCAGCTCTGCACATTGTGATTCTCTAAGATTTTACATGAATGATATACGTTAGTTTGCTCAGTACTATTTGTATTGTACTCTACGTTTCTCCAAGGACACGATTTTCATTGTTCTTTTAACAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGAACGGAAGATATCAAGGGCACCTGAAGTTTATAATTTTGGAGGAAAATGTTTGTGTAAAGTATAGAAAAGCCGGTCAATGAACTCGCACTTGAAGGTGATTGGAATGAGAAAATATCTAAAAAGAATTTGGTTTCCACTCAAACTCCTTGTGGGTCCTAAAGCTGCTGTGAAATGGGATGATGAAACTCACACAGTTCAAACTTTTGTTGAACTCGTAGTTGCACCATGTTCTATTCCACTTCTGATCTCTTTGTAAATTGAAGATGATTGCTTAAAAACTGAAGTTCAATCAAATTAAAGTATTCCATACTCAATCAAGTACCCAGAACTAGAATGTTGTTAATAATGATTTAAAGCAAAAATCTAAACTTGTAAGAGAACTAATCAGAACTTAAATGTTTTTTCAAAT

mRNA sequence

ATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGA

Coding sequence (CDS)

ATGAATTGCTCACGAAAGAGCTACCTTTGGTTTGATGTGTCGATGAAGTTAGCGGACAGTGAGCAGATGCAGATGAATTCTTCAATGAGGTATGGATGCATTCCTGAGAACAAGAGCTTTAACGCAGACGACTCGATCTGTTGGAAGCGATACCATGAACTTCAACACAATAGTCATAAGGCATGCAACTTTTATATTAAGTCCACCTCTTTGAGAAGGATCCAATGA

Protein sequence

MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHKACNFYIKSTSLRRIQ*
Homology
[Close]
BLAST of Csa1G046200 vs. TrEMBL
Match: A0A0A0LR94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046200 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.8e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60
          MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK
Sbjct: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60

Query: 61 ACNFYIKSTSLRRIQ 76
          ACNFYIKSTSLRRIQ
Sbjct: 61 ACNFYIKSTSLRRIQ 75

[Close]
BLAST of Csa1G046200 vs. NCBI nr
Match: gi|700209227|gb|KGN64323.1| (hypothetical protein Csa_1G046200 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60
          MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK
Sbjct: 1  MNCSRKSYLWFDVSMKLADSEQMQMNSSMRYGCIPENKSFNADDSICWKRYHELQHNSHK 60

Query: 61 ACNFYIKSTSLRRIQ 76
          ACNFYIKSTSLRRIQ
Sbjct: 61 ACNFYIKSTSLRRIQ 75

The following BLAST results are available for this feature:
BLAST of Csa1G046200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR94_CUCSA8.8e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046200 PE=4 SV=1[more]
BLAST of Csa1G046200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209227|gb|KGN64323.1|1.3e-37100.00hypothetical protein Csa_1G046200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087744cucumber EST collection version 3.0transcribed_cluster
CU162655cucumber EST collection version 3.0transcribed_cluster
CU178113cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G046200.1Csa1G046200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU178113CU178113transcribed_cluster
CU087744CU087744transcribed_cluster
CU162655CU162655transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G046200MELO3C035746.2Melon (DHL92) v3.6.1cumedB022
Csa1G046200CSPI01G08620Wild cucumber (PI 183967)cpicuB000
Csa1G046200CsGy1G008530Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G046200Watermelon (97103) v2cuwmbB001
Csa1G046200Watermelon (97103) v2cuwmbB017
Csa1G046200Watermelon (97103) v2cuwmbB072
Csa1G046200Watermelon (97103) v2cuwmbB087
Csa1G046200Watermelon (97103) v2cuwmbB088
Csa1G046200Wax gourdcuwgoB002
Csa1G046200Wax gourdcuwgoB030
Csa1G046200Cucumber (Chinese Long) v2cucuB001
Csa1G046200Cucumber (Chinese Long) v2cucuB007
Csa1G046200Cucumber (Gy14) v1cgycuB106
Csa1G046200Cucumber (Gy14) v1cgycuB301
Csa1G046200Cucurbita maxima (Rimu)cmacuB066
Csa1G046200Cucurbita maxima (Rimu)cmacuB107
Csa1G046200Cucurbita maxima (Rimu)cmacuB217
Csa1G046200Cucurbita maxima (Rimu)cmacuB233
Csa1G046200Cucurbita maxima (Rimu)cmacuB390
Csa1G046200Cucurbita moschata (Rifu)cmocuB057
Csa1G046200Cucurbita moschata (Rifu)cmocuB093
Csa1G046200Cucurbita moschata (Rifu)cmocuB202
Csa1G046200Cucurbita moschata (Rifu)cmocuB219
Csa1G046200Cucurbita moschata (Rifu)cmocuB380
Csa1G046200Melon (DHL92) v3.5.1cumeB005
Csa1G046200Melon (DHL92) v3.5.1cumeB027
Csa1G046200Melon (DHL92) v3.5.1cumeB046
Csa1G046200Melon (DHL92) v3.5.1cumeB067
Csa1G046200Watermelon (Charleston Gray)cuwcgB001
Csa1G046200Watermelon (Charleston Gray)cuwcgB013
Csa1G046200Watermelon (Charleston Gray)cuwcgB073
Csa1G046200Watermelon (Charleston Gray)cuwcgB089
Csa1G046200Watermelon (97103) v1cuwmB006
Csa1G046200Watermelon (97103) v1cuwmB000
Csa1G046200Watermelon (97103) v1cuwmB053
Csa1G046200Watermelon (97103) v1cuwmB086
Csa1G046200Cucurbita pepo (Zucchini)cpecuB029
Csa1G046200Cucurbita pepo (Zucchini)cpecuB358
Csa1G046200Cucurbita pepo (Zucchini)cpecuB505
Csa1G046200Cucurbita pepo (Zucchini)cpecuB595
Csa1G046200Cucurbita pepo (Zucchini)cpecuB642
Csa1G046200Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G046200Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G046200Bottle gourd (USVL1VR-Ls)culsiB028
Csa1G046200Bottle gourd (USVL1VR-Ls)culsiB064
Csa1G046200Cucumber (Gy14) v2cgybcuB010
Csa1G046200Melon (DHL92) v3.6.1cumedB000
Csa1G046200Melon (DHL92) v3.6.1cumedB039
Csa1G046200Melon (DHL92) v3.6.1cumedB062
Csa1G046200Silver-seed gourdcarcuB0285
Csa1G046200Silver-seed gourdcarcuB0392
Csa1G046200Silver-seed gourdcarcuB0523
Csa1G046200Silver-seed gourdcarcuB1019