Csa1G040000.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G040000.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3996031 .. 3996653 (+)
Sequence length387
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTAATCAAACAACAACATCAGTTTTTATAAATGTATGTGTCGACGTCTTTTGTGATGTAAGTTTGTTGTTGTTGATTACTTTTGTTAAATCATTACGGATATATCTCAAATACTCGAGTTTGTGAGTTTCTCACTCAGTTATATCGAACCAACTTGAAAATTTGTAGAAGGAATTTAAGAAGTAAAAGTGTATGTATGATAGCTTTTTGCTCAGCTTAAAATTTATGTAACTGTAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

mRNA sequence

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Coding sequence (CDS)

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Protein sequence

MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPKNNGGGKYL*
Homology
[Close]
BLAST of Csa1G040000.1 vs. TrEMBL
Match: A0A0A0LVN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.1e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

[Close]
BLAST of Csa1G040000.1 vs. NCBI nr
Match: gi|700208990|gb|KGN64086.1| (hypothetical protein Csa_1G040000 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

The following BLAST results are available for this feature:
BLAST of Csa1G040000.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVN9_CUCSA8.1e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040000 PE=4 SV=1[more]
BLAST of Csa1G040000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208990|gb|KGN64086.1|1.2e-67100.00hypothetical protein Csa_1G040000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G040000Csa1G040000gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G040000.1Csa1G040000.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G040000.1.cds1Csa1G040000.1.cds1CDS
Csa1G040000.1.cds2Csa1G040000.1.cds2CDS