Csa1G040000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G040000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3996031 .. 3996653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTAATCAAACAACAACATCAGTTTTTATAAATGTATGTGTCGACGTCTTTTGTGATGTAAGTTTGTTGTTGTTGATTACTTTTGTTAAATCATTACGGATATATCTCAAATACTCGAGTTTGTGAGTTTCTCACTCAGTTATATCGAACCAACTTGAAAATTTGTAGAAGGAATTTAAGAAGTAAAAGTGTATGTATGATAGCTTTTTGCTCAGCTTAAAATTTATGTAACTGTAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

mRNA sequence

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Coding sequence (CDS)

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Protein sequence

MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPKNNGGGKYL*
Homology
[Close]
BLAST of Csa1G040000 vs. TrEMBL
Match: A0A0A0LVN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.1e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

[Close]
BLAST of Csa1G040000 vs. NCBI nr
Match: gi|700208990|gb|KGN64086.1| (hypothetical protein Csa_1G040000 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

The following BLAST results are available for this feature:
BLAST of Csa1G040000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVN9_CUCSA8.1e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040000 PE=4 SV=1[more]
BLAST of Csa1G040000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208990|gb|KGN64086.1|1.2e-67100.00hypothetical protein Csa_1G040000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125537cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G040000.1Csa1G040000.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125537CU125537transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G040000ClCG04G011510Watermelon (Charleston Gray)cuwcgB057
Csa1G040000CSPI01G06460Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G040000Cucurbita moschata (Rifu)cmocuB059
Csa1G040000Cucurbita moschata (Rifu)cmocuB077
Csa1G040000Cucurbita moschata (Rifu)cmocuB202
Csa1G040000Cucurbita moschata (Rifu)cmocuB380
Csa1G040000Cucurbita moschata (Rifu)cmocuB394
Csa1G040000Melon (DHL92) v3.5.1cumeB027
Csa1G040000Melon (DHL92) v3.5.1cumeB056
Csa1G040000Watermelon (Charleston Gray)cuwcgB083
Csa1G040000Watermelon (97103) v1cuwmB062
Csa1G040000Watermelon (97103) v1cuwmB096
Csa1G040000Cucurbita pepo (Zucchini)cpecuB023
Csa1G040000Cucurbita pepo (Zucchini)cpecuB029
Csa1G040000Cucurbita pepo (Zucchini)cpecuB357
Csa1G040000Cucurbita pepo (Zucchini)cpecuB505
Csa1G040000Cucurbita pepo (Zucchini)cpecuB655
Csa1G040000Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G040000Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G040000Cucumber (Gy14) v2cgybcuB001
Csa1G040000Cucumber (Gy14) v2cgybcuB004
Csa1G040000Cucumber (Gy14) v2cgybcuB013
Csa1G040000Melon (DHL92) v3.6.1cumedB022
Csa1G040000Melon (DHL92) v3.6.1cumedB048
Csa1G040000Silver-seed gourdcarcuB0415
Csa1G040000Silver-seed gourdcarcuB0492
Csa1G040000Silver-seed gourdcarcuB0539
Csa1G040000Silver-seed gourdcarcuB0542
Csa1G040000Silver-seed gourdcarcuB0623
Csa1G040000Watermelon (97103) v2cuwmbB054
Csa1G040000Watermelon (97103) v2cuwmbB080
Csa1G040000Wax gourdcuwgoB050
Csa1G040000Wax gourdcuwgoB106
Csa1G040000Cucumber (Chinese Long) v2cucuB000
Csa1G040000Cucumber (Chinese Long) v2cucuB003
Csa1G040000Cucumber (Gy14) v1cgycuB137
Csa1G040000Cucumber (Gy14) v1cgycuB302
Csa1G040000Cucurbita maxima (Rimu)cmacuB069
Csa1G040000Cucurbita maxima (Rimu)cmacuB088
Csa1G040000Cucurbita maxima (Rimu)cmacuB217
Csa1G040000Cucurbita maxima (Rimu)cmacuB405
Csa1G040000Cucurbita maxima (Rimu)cmacuB390