Csa1G033290.1 (mRNA) Cucumber (Chinese Long) v2

NameCsa1G033290.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3601214 .. 3601627 (-)
Sequence length309
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGAAAAAAGAGAAGATTGAGAGAACCAAAGTGAGGGAAATGGGAAAGAAAGCAAAGAAGAGGAAGATCAAAGAAAAAAAGGGGAAAACCCAAGTGAGGAAAGAGGCAAGAGAAAGTGTAGAGGGGGAGGTACGATATGAATCGCACCGACAATGAGTAAATGAATGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGATATGGAGGAAGTTAAAAGGGAAGGGACTGGCGGAAAGGGAGAATGGCGGGCAGCAAAACAGGAAAGGCAAAGGCAAAGGCAAAGGCGAAGGCATTCAATCCTCTGCTTACAAGATCGCACGAAAGGTCAGCCTAAGATTTCGGCCGTGAAAATTAGAGCAACCGATCAGCAAAATTTGTTTCTTTTTCAACCCCTCCTCCCTCCCCTTCCTTT

mRNA sequence

ATGCGGAAAAAAGAGAAGATTGAGAGAACCAAAGTGAGGGAAATGGGAAAGAAAGCAAAGAAGAGGAAGATCAAAGAAAAAAAGGGGAAAACCCAAGTGAGGAAAGAGGCAAGAGAAAGTGTAGAGGGGGAGAAGAAGAAGAAGAAGAAGAAAAGGAAGATATGGAGGAAGTTAAAAGGGAAGGGACTGGCGGAAAGGGAGAATGGCGGGCAGCAAAACAGGAAAGGCAAAGGCAAAGGCAAAGGCGAAGGCATTCAATCCTCTGCTTACAAGATCGCACGAAAGGTCAGCCTAAGATTTCGGCCGTGA

Coding sequence (CDS)

ATGCGGAAAAAAGAGAAGATTGAGAGAACCAAAGTGAGGGAAATGGGAAAGAAAGCAAAGAAGAGGAAGATCAAAGAAAAAAAGGGGAAAACCCAAGTGAGGAAAGAGGCAAGAGAAAGTGTAGAGGGGGAGAAGAAGAAGAAGAAGAAGAAAAGGAAGATATGGAGGAAGTTAAAAGGGAAGGGACTGGCGGAAAGGGAGAATGGCGGGCAGCAAAACAGGAAAGGCAAAGGCAAAGGCAAAGGCGAAGGCATTCAATCCTCTGCTTACAAGATCGCACGAAAGGTCAGCCTAAGATTTCGGCCGTGA

Protein sequence

MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGKGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP*
BLAST of Csa1G033290.1 vs. TrEMBL
Match: A0A0A0LQ62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033290 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG 60
           MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG
Sbjct: 1   MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG 60

Query: 61  KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP 103
           KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP
Sbjct: 61  KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP 102

BLAST of Csa1G033290.1 vs. TrEMBL
Match: L2FIG0_COLGN (Uncharacterized protein OS=Colletotrichum gloeosporioides (strain Nara gc5) GN=CGGC5_13303 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-07
Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           +KK+K ++ K ++  KK KK+K K+KK K + +K+ ++  + +KKKKKKK+K  +K K K
Sbjct: 242 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 301

Query: 62  GLAERENGGQQNRKGKGKGKGEG 85
              +++   ++ +K K K KGEG
Sbjct: 302 KKKKKKKKKKKKKKKKKKKKGEG 324

BLAST of Csa1G033290.1 vs. TrEMBL
Match: L2FIG0_COLGN (Uncharacterized protein OS=Colletotrichum gloeosporioides (strain Nara gc5) GN=CGGC5_13303 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-06
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           +KK+K ++ K ++  KK KK+K K+KK K + +K+ ++  + +KKKKKKK+K  +K KG+
Sbjct: 264 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGE 323

Query: 62  GLAERENGG------QQNRKG 77
           G  ER+         ++NR+G
Sbjct: 324 GRRERQRESGRFFPLERNRQG 344


HSP 2 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1

Query: 2  RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
          RKK + +R +  E  +K +K KI EK+   + R+   +  EG K+KKK+KR+  R+ KGK
Sbjct: 10 RKKREEKREEREEEVEKKEKTKIGEKEEMNERRERGGKGGEGRKRKKKRKRERGRREKGK 69

Query: 62 GLAE--RENGGQQNRKGKGKGKGE 84
             E  R+ GG + R+GK KG+GE
Sbjct: 70 REKEKKRKEGGGRGRRGKEKGRGE 93

BLAST of Csa1G033290.1 vs. TrEMBL
Match: A0A0F5LTM3_9RHIZ (Uncharacterized protein OS=Devosia limi DSM 17137 GN=VW29_06085 PE=4 SV=1)

HSP 1 Score: 42.0 bits (97), Expect = 5.2e-01
Identity = 32/112 (28.57%), Postives = 58/112 (51.79%), Query Frame = 1

Query: 3   KKEKIERTKVREMGKKAKKRKIKEKKGK-------TQVRKEARESVEGEKKKKKKKRKIW 62
           ++E++E+ +  ++G+K +  + +E+ GK        + RK  R   E  K++K+KKRK  
Sbjct: 20  REEEVEKKEKTKIGEKEEMNERRERGGKGGEGRKRKKKRKRERGRREKGKREKEKKRKEG 79

Query: 63  R------KLKGKGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFR 102
                  K KG+G   RE  G++ R+G G+ + E  +    +  RK  +R R
Sbjct: 80  GGRGRRGKEKGRGERRREKRGEEGREGGGE-EDEKKRKETERGGRKEKVRRR 130


HSP 2 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           ++KEK E+ K +E  K+ +K K KEK+ + +  KE  +  E EK+K+K+K K   K K K
Sbjct: 361 KEKEK-EKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEK 420

Query: 62  GLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFR 102
              E+E  G+++R+GKGK K +  +    K  R+ +L FR
Sbjct: 421 ---EKEKEGKKSREGKGKEKEKEREKEREKEGRRRALVFR 456

BLAST of Csa1G033290.1 vs. TrEMBL
Match: A0A131Y4D5_IXORI (Putative splicing factor sr protein (Fragment) OS=Ixodes ricinus PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-06
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKK-KKKKRKIWRKLKG 61
           R+ +K +R K    GKK +KRK KEKKG+    KE +E   GEK+K K++K +  +K KG
Sbjct: 550 REGKKRKRKKEEGKGKKREKRKEKEKKGE----KEKKERERGEKRKGKREKEREKKKRKG 609

Query: 62  KGLAERENGGQQNRKGKGKGKGEG 85
           +     E GG + R  +GK +GEG
Sbjct: 610 ERRGGEERGGGKERGKEGKREGEG 629

BLAST of Csa1G033290.1 vs. TAIR10
Match: AT5G60530.1 (AT5G60530.1 late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 50.1 bits (118), Expect = 9.7e-07
Identity = 27/82 (32.93%), Postives = 46/82 (56.10%), Query Frame = 1

Query: 11  KVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGKGLAERENGG 70
           K +E  KK K++  K+KK K +  KE +E  + E+K+K+KK K+ ++ K K   E+E   
Sbjct: 59  KDKEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKE 118

Query: 71  QQNRKGKGKGKGEGIQSSAYKI 93
           ++ +  + K K E   ++ Y+I
Sbjct: 119 KERKAKEKKDKEESEAAARYRI 140


HSP 2 Score: 38.9 bits (89), Expect = 2.2e-03
Identity = 26/96 (27.08%), Postives = 49/96 (51.04%), Query Frame = 1

Query: 4   KEKIERTKVREMGKKAKKRKIKEKKGKTQVR-------KEARESVEGEKKKKKKKRKIWR 63
           K K +  K    G K K+++ K+K+   + +       KE +E  + E+K+K+KK K+ +
Sbjct: 45  KGKGDNGKSNGNGPKDKEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEK 104

Query: 64  KLKGKGLAERENGGQQNRKGKGKGKGEGIQSSAYKI 93
           + K K   E+E   ++ +  + K K E   ++ Y+I
Sbjct: 105 EKKDKERKEKERKEKERKAKEKKDKEESEAAARYRI 140

BLAST of Csa1G033290.1 vs. NCBI nr
Match: gi|700208914|gb|KGN64010.1| (hypothetical protein Csa_1G033290 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 3.3e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG 60
           MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG
Sbjct: 1   MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKG 60

Query: 61  KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP 103
           KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP
Sbjct: 61  KGLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFRP 102

BLAST of Csa1G033290.1 vs. NCBI nr
Match: gi|944296430|gb|KQL59787.1| (hypothetical protein AAES_18561 [Amazona aestiva])

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           ++KEK E+ K +E  K+ +K K KEK+ + +  KE  +  E ++K+K++K++   K K K
Sbjct: 13  KEKEKEEKEKQKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEEKEKEKEEKKEEKEKEKEK 72

Query: 62  GLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFR 102
              E+E   +  +KGKGKGKGE + + AY  AR +   F+
Sbjct: 73  E-KEKEKEKKGKKKGKGKGKGEKLGNQAYNTARNIMRHFQ 111

BLAST of Csa1G033290.1 vs. NCBI nr
Match: gi|944296430|gb|KQL59787.1| (hypothetical protein AAES_18561 [Amazona aestiva])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1

Query: 1   MR---------KKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKK 60
           M+         KKEK +  K ++  K+ +K K KEK+ + +  KE  +  E E+K+K+K+
Sbjct: 1   MKRKREGKRRKKKEKEKEEKEKQKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEEKEKEKE 60

Query: 61  RKIWRKLKGKGL-AERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLRFR 102
            K   K K K    E+E   +  +KGKGKGKGE + + AY  AR +   F+
Sbjct: 61  EKKEEKEKEKEKEKEKEKEKKGKKKGKGKGKGEKLGNQAYNTARNIMRHFQ 111


HSP 2 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           ++KEK E+ K +E  K+ +K K KEK+ + +  KE  +  E EK+K+K+K K   K K K
Sbjct: 415 KEKEK-EKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEK 474

Query: 62  GLAERENGGQQNRKGKGKGKGEG 85
               +E  G++  KGKGKGKG+G
Sbjct: 475 ERRGKERKGERKGKGKGKGKGKG 496

BLAST of Csa1G033290.1 vs. NCBI nr
Match: gi|449278783|gb|EMC86543.1| (Dynein heavy chain-like protein [Columba livia])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1

Query: 2   RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
           ++KEK E+ K +E  K+ +K K KEK+ + +  KE  +  E EK+K+K+K K   K K K
Sbjct: 413 KEKEK-EKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEK 472

Query: 62  GLAERENGGQQNRKGKGKGKGEGIQSSAYKIARKVSLR 100
               R    +  RKGKGKGKG+G      K  R+ + R
Sbjct: 473 EKERRGKERKGERKGKGKGKGKGKGKGKQKQEREKTHR 509


HSP 2 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 3   KKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGKG 62
           K++K  R K R+ GKK ++++ ++KKG    RK+ ++  EG+K+K++K+RK  +K KGK 
Sbjct: 74  KRKKKGRKKERKEGKKEERKERRKKKG----RKKRKKRKEGKKEKRRKRRKGEKKEKGKE 133

Query: 63  LAERENGGQQNRK-----GKGKGK-GEGIQSSA 90
             +R+ G ++ RK     GKGKG+ G+G +S A
Sbjct: 134 GRKRKEGKKEERKERRKEGKGKGREGKGRESEA 162

BLAST of Csa1G033290.1 vs. NCBI nr
Match: gi|565312882|gb|ETE65356.1| (DNA ligase 1, partial [Ophiophagus hannah])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1

Query: 2   RKKEKIERTKVREMG-------KKAKKRKIKEKKGKTQVRKEARES---------VEGEK 61
           +K  K ER K R+ G       +K K RK + K+GK + RKE R+           EG+K
Sbjct: 53  KKGRKEEREKRRKKGGKEEKEKRKKKGRKKERKEGKKEERKERRKKKGRKKRKKRKEGKK 112

Query: 62  KKKKKKRKIWRKLKGKGLAERENGGQQNRK-----GKGKGK-GEGIQSSA 90
           +K++K+RK  +K KGK   +R+ G ++ RK     GKGKG+ G+G +S A
Sbjct: 113 EKRRKRRKGEKKEKGKEGRKRKEGKKEERKERRKEGKGKGREGKGRESEA 162


HSP 2 Score: 47.8 bits (112), Expect = 1.4e-02
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1

Query: 4   KEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKK--KKRKIWRKLKGK 63
           KE  E+ + RE  K+ K+RK   K+GK + +K+ R+  E EK++KK  K+ K  RK KG+
Sbjct: 22  KEGREKRRKREGRKEEKRRKKGGKEGKEKRKKKGRKE-EREKRRKKGGKEEKEKRKKKGR 81

Query: 64  GLAERENGGQQNRKGKGKGKG 83
              ER+ G ++ RK + K KG
Sbjct: 82  -KKERKEGKKEERKERRKKKG 100


HSP 3 Score: 45.4 bits (106), Expect = 6.8e-02
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 1

Query: 1   MRKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARE----SVEGEKKKKKKKRKIWR 60
           M+++++ +R K R+  KK K ++ +EK+ K + RKE +       EG++K+KKK RK  R
Sbjct: 1   MKREKEEKRRKRRKGEKKEKGKEGREKRRKREGRKEEKRRKKGGKEGKEKRKKKGRKEER 60

Query: 61  KLKGK--GLAERENGGQQNRKGKGK-GKGEGIQSSAYKIARK 96
           + + K  G  E+E   ++ RK + K GK E  +    K  RK
Sbjct: 61  EKRRKKGGKEEKEKRKKKGRKKERKEGKKEERKERRKKKGRK 102


HSP 4 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1

Query: 2  RKKEKIERTKVREMGKKAKKRKIKEKKGKTQVRKEARESVEGEKKKKKKKRKIWRKLKGK 61
          RKK + +R +  E  +K +K KI EK+   + R+   +  EG K+KKK+KR+  R+ KGK
Sbjct: 10 RKKREEKREEREEEVEKKEKTKIGEKEEMNERRERGGKGGEGRKRKKKRKRERGRREKGK 69

Query: 62 GLAE--RENGGQQNRKGKGKGKGE 84
             E  R+ GG + R+GK KG+GE
Sbjct: 70 REKEKKRKEGGGRGRRGKEKGRGE 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LQ62_CUCSA2.3e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033290 PE=4 SV=1[more]
L2FIG0_COLGN8.3e-0738.55Uncharacterized protein OS=Colletotrichum gloeosporioides (strain Nara gc5) GN=C... [more]
L2FIG0_COLGN9.2e-0638.27Uncharacterized protein OS=Colletotrichum gloeosporioides (strain Nara gc5) GN=C... [more]
A0A0F5LTM3_9RHIZ5.2e-0128.57Uncharacterized protein OS=Devosia limi DSM 17137 GN=VW29_06085 PE=4 SV=1[more]
A0A131Y4D5_IXORI4.1e-0642.86Putative splicing factor sr protein (Fragment) OS=Ixodes ricinus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60530.19.7e-0732.93 late embryogenesis abundant protein-related / LEA protein-related[more]
Match NameE-valueIdentityDescription
gi|700208914|gb|KGN64010.1|3.3e-49100.00hypothetical protein Csa_1G033290 [Cucumis sativus][more]
gi|944296430|gb|KQL59787.1|2.8e-0837.00hypothetical protein AAES_18561 [Amazona aestiva][more]
gi|944296430|gb|KQL59787.1|2.0e-0635.14hypothetical protein AAES_18561 [Amazona aestiva][more]
gi|449278783|gb|EMC86543.1|2.7e-0638.78Dynein heavy chain-like protein [Columba livia][more]
gi|565312882|gb|ETE65356.1|1.3e-0538.18DNA ligase 1, partial [Ophiophagus hannah][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G033290Csa1G033290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G033290.1Csa1G033290.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G033290.1.utr3p1Csa1G033290.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G033290.1.cds2Csa1G033290.1.cds2CDS
Csa1G033290.1.cds1Csa1G033290.1.cds1CDS