Csa1G013180.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G013180.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChaperone protein ClpB
LocationChr1 : 1755287 .. 1755984 (+)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTCTAAAACTATGTATGCTTCCTCGATAAGAAATGCAAGAAACCCTAACCACTTCTCAACAATATAACTGCACCGAACAGAAAAGGGCAATATGGGTCTATTAGATGACTAATTTCACGATCTCAACAACAAGCTCCATCAAATCTGACAAAACAATAGAGTCGTTTTTCTTCCATACTATTTTCTATCCCATTCTATAAACAACAATAATAAAATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGTGAGAAAGGATCGGAAGGAAATTACAGTGATAGTGCTTATAGTGTTTATAGACGAAATTCATATGTTGGTCCGACATGATCAAGGAACCGCCGCGGAGATTCTGAAACCGGCGCTGTGGAGAGGGAATTTCCGGTGCATTGGAGCGACGACGTTGAAGGAATACAAAAGGTATATTGGCGAGGAGATTTAA

mRNA sequence

ATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGAACCGCCGCGGAGATTCTGAAACCGGCGCTGTGGAGAGGGAATTTCCGGTGCATTGGAGCGACGACGTTGAAGGAATACAAAAGGTATATTGGCGAGGAGATTTAA

Coding sequence (CDS)

ATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGAACCGCCGCGGAGATTCTGAAACCGGCGCTGTGGAGAGGGAATTTCCGGTGCATTGGAGCGACGACGTTGAAGGAATACAAAAGGTATATTGGCGAGGAGATTTAA

Protein sequence

MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPDQALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEEI*
Homology
[Close]
BLAST of Csa1G013180.1 vs. Swiss-Prot
Match: CLPB4_ARATH (Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana GN=CLPB4 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 48/167 (28.74%), Postives = 68/167 (40.72%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRH-----LRRRKNS--------YRRSTRTENR 67
           ALE YG+DL E A +  +DP+  R  EIR       RR KN+          ++   E  
Sbjct: 241 ALEKYGNDLTEMARRGKLDPVIGRDDEIRRCIQILCRRTKNNPVIIGEPGVGKTAIAEGL 300

Query: 68  LRK-----CPDQALRRKNRRTGHGSPTRRSNLR-------RAIGREIEECG--------- 127
            ++      P+  + RK      GS    +  R       +A+ +E+             
Sbjct: 301 AQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDE 360

Query: 128 ----------DDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                     D    A+ +LKP L RG  RCIGATTL EY++YI ++
Sbjct: 361 IHTVVGAGAMDGAMDASNLLKPMLGRGELRCIGATTLTEYRKYIEKD 407

[Close]
BLAST of Csa1G013180.1 vs. Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 51/168 (30.36%), Postives = 74/168 (44.05%), Query Frame = 1 

Query: 7   SALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRSTRTEN 66
           SAL+ YG+DL E   +  +DP+  R  E+  L     RRRKN+          ++   E 
Sbjct: 185 SALKAYGYDLTEMVRESKLDPVIGRSSEVERLILILCRRRKNNPVLIGEAGVGKTAIVEG 244

Query: 67  R-----LRKCPDQALRRKNRRT--------GHGSPTRRSNLRRAIGREIEECG------D 126
                 L + PD ALR+K   T        G     +     +A+  E+ + G      D
Sbjct: 245 LAQKIILNEVPD-ALRKKRLITLDLALMIAGTKYRGQFEERIKAVMDEVRKHGNILLFID 304

Query: 127 DGRT------------AAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
           +  T            A+ ILKPAL RG  +CIGATT+ EY+++I ++
Sbjct: 305 ELHTIVGAGAAEGAIDASNILKPALARGEIQCIGATTIDEYRKHIEKD 351

[Close]
BLAST of Csa1G013180.1 vs. Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 50/167 (29.94%), Postives = 74/167 (44.31%), Query Frame = 1 

Query: 7   SALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRSTRTEN 66
           SAL+ YG+DL E  ++  +DP+  R  E+  L     RRRKN+          ++   E 
Sbjct: 187 SALKAYGYDLTEMFKESRLDPVIGRSAEVERLILILCRRRKNNPVLVGEAGVGKTAIVEG 246

Query: 67  RLRKCPD----QALRRKNRRT--------GHGSPTRRSNLRRAIGREIEECG------DD 126
             +K       +ALR+K   T        G     +     +A+  E+ + G      D+
Sbjct: 247 LAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQFEERIKAVMDEVRKHGNILLFIDE 306

Query: 127 GRT------------AAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
             T            A+ ILKPAL RG  +CIGATTL EY+++I ++
Sbjct: 307 LHTIVGAGAAEGAIDASHILKPALARGEIQCIGATTLDEYRKHIEKD 353

[Close]
BLAST of Csa1G013180.1 vs. Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 50/167 (29.94%), Postives = 74/167 (44.31%), Query Frame = 1 

Query: 7   SALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRSTRTEN 66
           SAL+ YG+DL E  ++  +DP+  R  E+  L     RRRKN+          ++   E 
Sbjct: 204 SALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCRRRKNNPVLIGEAGVGKTAIVEG 263

Query: 67  RLRKCPD----QALRRKNRRT--------GHGSPTRRSNLRRAIGREIEECG------DD 126
             +K       +ALR+K   T        G     +     +A+  E+ + G      D+
Sbjct: 264 LAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQFEERIKAVMDEVRKHGNILLFIDE 323

Query: 127 GRT------------AAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
             T            A+ ILKPAL RG  +CIGATTL EY+++I ++
Sbjct: 324 LHTIVGAGAAEGAIDASHILKPALARGEIQCIGATTLDEYRKHIEKD 370

[Close]
BLAST of Csa1G013180.1 vs. TrEMBL
Match: A0A0A0LRT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013180 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.4e-69
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 1   MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60
           MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD
Sbjct: 1   MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60

Query: 61  QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL 120
           QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL
Sbjct: 61  QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL 120

Query: 121 KEYKRYIGEEI 132
           KEYKRYIGEEI
Sbjct: 121 KEYKRYIGEEI 131

[Close]
BLAST of Csa1G013180.1 vs. TrEMBL
Match: A0A089VI33_9STRA (Clp protease ATP binding subunit OS=Roundia cardiophora GN=clpC PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 50/166 (30.12%), Postives = 69/166 (41.57%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS-------------YRRST 67
           AL+ Y  ++ + AEK  +DP+  R +EI  L     RRRKN+                  
Sbjct: 173 ALDEYTENITQEAEKGLLDPVIGRDEEIDSLIKVLGRRRKNNPVLLGEAGVGKTACAEGL 232

Query: 68  RTENRLRKCPD----QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRT------- 127
             E     CPD      +R  +  +       R      + R I+E    G+T       
Sbjct: 233 AQEMNSYDCPDFLTEHVVRSLDLGSVLAGTKYRGEFEERMKRIIDEVKRHGKTILVIDEI 292

Query: 128 --------------AAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                         AA +LKPAL RGN RCIGATTL EY++YI ++
Sbjct: 293 HTLVGAGAAEGAVDAANLLKPALARGNLRCIGATTLDEYRKYIEKD 338

[Close]
BLAST of Csa1G013180.1 vs. TrEMBL
Match: A0A142YIQ1_9PLAN (Chaperone protein ClpB OS=Planctomyces sp. SH-PL62 GN=clpB1 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 51/167 (30.54%), Postives = 71/167 (42.51%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRSTRTENR 67
           ALE YG DL E A K  +DP+  R  EIR +     RR KN+          ++   E  
Sbjct: 160 ALERYGRDLVEAARKGKMDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIAEGL 219

Query: 68  LRKC-----PDQALRRKNRRTGHGSPTRRSNLR-------RAIGREIEEC---------- 127
            ++      PD    RK      G+    +  R       +A+ +E+ E           
Sbjct: 220 AQRIVSGDVPDSLQNRKLIALDMGALVAGAKYRGEFEERLKAVLKEVTESEGRIILFIDE 279

Query: 128 ---------GDDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                    GD    AA +LKPAL RG  RCIGATTL E++ +I ++
Sbjct: 280 LHLVVGAGKGDGAMDAANLLKPALARGELRCIGATTLDEFREHIEKD 326

[Close]
BLAST of Csa1G013180.1 vs. TrEMBL
Match: A0A0A0LPI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013170 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 

Query: 94  DDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
           D   TAAEILKPAL RG FRCIGATTLKEYKRYI ++
Sbjct: 132 DHQGTAAEILKPALGRGGFRCIGATTLKEYKRYIEKD 168

[Close]
BLAST of Csa1G013180.1 vs. TrEMBL
Match: A0A0A0LPI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013170 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R +EI  L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHKEICRL 35


HSP 2 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 48/173 (27.75%), Postives = 77/173 (44.51%), Query Frame = 1 

Query: 3   KMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRST 62
           +++  +L+ YG DL+E A    +DP+  R +EIR +     RR KN+          ++ 
Sbjct: 170 EVSYQSLKKYGRDLSEAAAANELDPVIGRDKEIRRVIQILSRRTKNNPIILGDPGVGKTA 229

Query: 63  RTENRLRK-----CPDQALRRKNRRTGHGSPTRRSNLR-------RAIGREIEE------ 122
             E   ++      PD    R+      G+    + LR       +++ +E++E      
Sbjct: 230 IAEGLAQRIVSGDVPDTLAGRQLISLDLGALVAGAKLRGEFEERLKSVIKEVQESSGQII 289

Query: 123 --------------CGDDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                          G+ G  A  ILKP L RG  RCIGATTL EY++YI ++
Sbjct: 290 LFIDEIHMVVGAGSAGESGMDAGNILKPMLARGELRCIGATTLDEYRKYIEKD 342

[Close]
BLAST of Csa1G013180.1 vs. TAIR10
Match: AT2G25140.1 (AT2G25140.1 casein lytic proteinase B4)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 48/167 (28.74%), Postives = 68/167 (40.72%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRH-----LRRRKNS--------YRRSTRTENR 67
           ALE YG+DL E A +  +DP+  R  EIR       RR KN+          ++   E  
Sbjct: 241 ALEKYGNDLTEMARRGKLDPVIGRDDEIRRCIQILCRRTKNNPVIIGEPGVGKTAIAEGL 300

Query: 68  LRK-----CPDQALRRKNRRTGHGSPTRRSNLR-------RAIGREIEECG--------- 127
            ++      P+  + RK      GS    +  R       +A+ +E+             
Sbjct: 301 AQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDE 360

Query: 128 ----------DDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                     D    A+ +LKP L RG  RCIGATTL EY++YI ++
Sbjct: 361 IHTVVGAGAMDGAMDASNLLKPMLGRGELRCIGATTLTEYRKYIEKD 407

[Close]
BLAST of Csa1G013180.1 vs. NCBI nr
Match: gi|700208623|gb|KGN63719.1| (hypothetical protein Csa_1G013180 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 6.3e-69
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 1   MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60
           MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD
Sbjct: 1   MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60

Query: 61  QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL 120
           QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL
Sbjct: 61  QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRTAAEILKPALWRGNFRCIGATTL 120

Query: 121 KEYKRYIGEEI 132
           KEYKRYIGEEI
Sbjct: 121 KEYKRYIGEEI 131

[Close]
BLAST of Csa1G013180.1 vs. NCBI nr
Match: gi|659106140|ref|XP_008453261.1| (PREDICTED: chaperone protein ClpB1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 88  EIEECGDDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
           EI     +G TAAEILKPAL RGNFRCIGATTLKEYKRYI ++
Sbjct: 124 EIHMFVQNGGTAAEILKPALGRGNFRCIGATTLKEYKRYIEKD 166

[Close]
BLAST of Csa1G013180.1 vs. NCBI nr
Match: gi|659106140|ref|XP_008453261.1| (PREDICTED: chaperone protein ClpB1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R QEIR L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHQEIRRL 35


HSP 2 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 50/166 (30.12%), Postives = 69/166 (41.57%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS-------------YRRST 67
           AL+ Y  ++ + AEK  +DP+  R +EI  L     RRRKN+                  
Sbjct: 173 ALDEYTENITQEAEKGLLDPVIGRDEEIDSLIKVLGRRRKNNPVLLGEAGVGKTACAEGL 232

Query: 68  RTENRLRKCPD----QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGRT------- 127
             E     CPD      +R  +  +       R      + R I+E    G+T       
Sbjct: 233 AQEMNSYDCPDFLTEHVVRSLDLGSVLAGTKYRGEFEERMKRIIDEVKRHGKTILVIDEI 292

Query: 128 --------------AAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                         AA +LKPAL RGN RCIGATTL EY++YI ++
Sbjct: 293 HTLVGAGAAEGAVDAANLLKPALARGNLRCIGATTLDEYRKYIEKD 338

[Close]
BLAST of Csa1G013180.1 vs. NCBI nr
Match: gi|1015457313|gb|AMV39095.1| (Chaperone protein ClpB 1 [Planctomyces sp. SH-PL62])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 51/167 (30.54%), Postives = 71/167 (42.51%), Query Frame = 1 

Query: 8   ALETYGHDLAETAEKQTIDPIFRRRQEIRHL-----RRRKNS--------YRRSTRTENR 67
           ALE YG DL E A K  +DP+  R  EIR +     RR KN+          ++   E  
Sbjct: 160 ALERYGRDLVEAARKGKMDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIAEGL 219

Query: 68  LRKC-----PDQALRRKNRRTGHGSPTRRSNLR-------RAIGREIEEC---------- 127
            ++      PD    RK      G+    +  R       +A+ +E+ E           
Sbjct: 220 AQRIVSGDVPDSLQNRKLIALDMGALVAGAKYRGEFEERLKAVLKEVTESEGRIILFIDE 279

Query: 128 ---------GDDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
                    GD    AA +LKPAL RG  RCIGATTL E++ +I ++
Sbjct: 280 LHLVVGAGKGDGAMDAANLLKPALARGELRCIGATTLDEFREHIEKD 326

[Close]
BLAST of Csa1G013180.1 vs. NCBI nr
Match: gi|449441089|ref|XP_004138316.1| (PREDICTED: chaperone protein ClpB1 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 

Query: 94  DDGRTAAEILKPALWRGNFRCIGATTLKEYKRYIGEE 131
           D   TAAEILKPAL RG FRCIGATTLKEYKRYI ++
Sbjct: 132 DHQGTAAEILKPALGRGGFRCIGATTLKEYKRYIEKD 168

The following BLAST results are available for this feature:
BLAST of Csa1G013180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLPB4_ARATH1.8e-0728.74Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana GN=CLPB4 PE=2 SV=... [more]
CLPC_CHLPN1.2e-0630.36Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae ... [more]
CLPC_CHLTR1.2e-0629.94Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis... [more]
CLPC_CHLMU1.5e-0629.94Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum (... [more]
BLAST of Csa1G013180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRT5_CUCSA4.4e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013180 PE=4 SV=1[more]
A0A089VI33_9STRA1.8e-0630.12Clp protease ATP binding subunit OS=Roundia cardiophora GN=clpC PE=3 SV=1[more]
A0A142YIQ1_9PLAN3.1e-0630.54Chaperone protein ClpB OS=Planctomyces sp. SH-PL62 GN=clpB1 PE=3 SV=1[more]
A0A0A0LPI1_CUCSA3.1e-0678.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013170 PE=4 SV=1[more]
A0A0A0LPI1_CUCSA1.0e-0474.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013170 PE=4 SV=1[more]
BLAST of Csa1G013180.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25140.11.0e-0828.74 casein lytic proteinase B4[more]
BLAST of Csa1G013180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208623|gb|KGN63719.1|6.3e-69100.00hypothetical protein Csa_1G013180 [Cucumis sativus][more]
gi|659106140|ref|XP_008453261.1|1.8e-0774.42PREDICTED: chaperone protein ClpB1 [Cucumis melo][more]
gi|659106140|ref|XP_008453261.1|5.8e-0680.00PREDICTED: chaperone protein ClpB1 [Cucumis melo][more]
gi|1015457313|gb|AMV39095.1|4.5e-0630.54Chaperone protein ClpB 1 [Planctomyces sp. SH-PL62][more]
gi|449441089|ref|XP_004138316.1|4.5e-0678.38PREDICTED: chaperone protein ClpB1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G013180Csa1G013180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G013180.1Csa1G013180.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G013180.1.utr5p1Csa1G013180.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G013180.1.cds1Csa1G013180.1.cds1CDS
Csa1G013180.1.cds2Csa1G013180.1.cds2CDS