Csa1G008510.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G008510.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1325705 .. 1331465 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGGAAACCAAAGCATGGCTCGTGATTGGGTACGGCAAAGGCAGGAGCGGCGCGTGGTGGTGCGGTCGTTTGGTGCTACCAAAGCAGAGTACCACGGTTGGTGTACGGAATCTACGTGTTCTTTCTTATAGGGACACCCAAAACACACTATCACGTGAAAATTCCTCTCTTGTCCCTTCATTTTCCACTATGCTTTTCCAATCCCACACCTTCCCATGCCAAATCATATCCATGCACCTCACTTTTCATCTTTTTTTTTTTTTTTTTATCGGCCTCTCGAACTTTCTACCTAGATAGTTAGAGGCTTTTGTGACGTAGAGTGAGTTATTAGAATATGTGGTTATATTGAAGTCTTTGAATTATAATAGTTTATAAGGGGTAGATTATTATAGTTTGAATTATTATAATCTATATTTGAAAAAAATAAATAATAGTGAAATGGGAGAGTGAAGATTTGTGATGTATTGGAGAGACGGGAGGTGAGGAATAGTGAAAGGATGGAGGAAGAAATATAAGAAATAATGGAAAAAAAATAGAATAGTTATAATTATGTTATTATGATAATCTTTGAAACAAACATACAGTGGGCTAACTCCTTCATAAACAAACATAACGTGAAACGACCCCTAAAGATGTTAAAATTTTCTAAAGTTGTTGAAATTTTATAATTTACCATAATTATAAAAATTGGATATCAAACTTATATAATCAATACAATTTATACAATTATGTAAGCTCAAAAGTTTAATTTCAAAGTTTGAATAAATTTGACATGCCCAGTTTTTTTAATTTGAAAATTTAAGGATGATTTTTGCAATTTTACACTACATGGTGTCGAACTATTGAACATTTTACTTTTTCTTAGTTGATAGTATGACTGTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCAGAAACGTGAGCATGTGCATAACACACACGATTTCAATGATAGTTTTATATCACTATAGCATAGACTAAGACACAGACAAGTGTTAAAAAATTATACAAAATAATATATCAACTAATGACATGATAAAGTAAGAACGTAAGGAATATACAGTAACCCAATTCTAGAAAAGTAGTGGTTGGATTGTACATATTCATATTTCGTCTATACTCAACATTTTACTATATGATAATATAATTTAAATTGTCAATAGCAAGTACAACTATATAGAAATTGAAATTGGACTTCTCATCCTCATAAATTTCTCAAACCTTGTCTGACTTTGTCGTCACATGCAGTCTTACACGTCCTCGATTATTGACCATTTTTTCAAACCAACATTGCTTTATCGAAGTAATAAACATCTTTATTTTATACCAACTATTTTTAAAATATTAAAAGTTATTTATTTATATTTATACTTAAATGATAAAAAAAACAACTTTTTAAAACAAAAGTCTATTATTATAAGTGTCTATTATATTGTAATATGAGTTTATAGACGATAAAATTTGTTTTCAATTATTGAAAAGAAAAAGGAATGAAAAAGAGAGAAGCAATAATGTAAGCAAGCAAAGGATAGGTGGCCTTTTAAAAGCACTCAAATTGCCTTTAAAAGAACTTTGTCTTGGAAATTGGAGAACCTTTATGGAATCAAAAGTTGTGCATTGCCTTTTAAGAAAAACTTTATATAATTTTCTCACTTTGTTTTAAGATATTTATTTTATAAATAAATAAATAAATAAATTTTCTTTTTGTTCCTTGTGATGGCTTTTATTAAATTAAGATAGATTTTAATAACTTCAAATTGGATATGTTACAAAGTAAGGTTAACAAAATTGAAAAGAATGGGTAAAAAATTGTTCAGAAAACAATGATAAATAAATCGAAATATTTATGAGTTATAGGAAGATTTTGAATTCTATTTTTTTCAAAAATTTCATATTTTACTTTTAAAAATTCTTCTAAAACGAATCTTAATTATTTTTTTTAGAAATAAGCTTATAAGCCCTACTTAGTTTATATCATACACTTTTAAATAATGTTTTTAAAACTAAACTATATATAATTTTTAAATTTAGACTTTTACTAAAATATAATTTCTTAACCAAATTGAGAAAATTAAATTTGAATAATTATAGTTGGACATTTAATCTAAACAACTCCTTTTACTTTAGTTTTAATTAATTTACAAGTGGGTGCACCAAATTTAGAAGCTGAATGATATTGATTTTTTCTTTTTTATAAACCAATGAATGAATTAGTGGACATAAAAGTTGATGGTGCAATAGATTTTATTTATATTGTTGGGTTATTGTGAGCCAATGACATACATCAAAGATGGTGTGATCCATTTGTAATATAGTGGTTGAGTTTGAAGGTTAGGTACAACCACAAATATGTATGATATGGATTACCAAACATCTAATAGGCATGATTTCTCCACCATTTTTCCTAACTATCTTAATCTAACATTATTTAGAGTATAACCCGATATCATTTTAAATACTATTCTTGTTTTACGTATGACTTAAGTTTTGGTTCATTTCATATGTCACTGTACTTTTAAAATATCTACGTTGGTTTTTATACTTTTAAAACGTGGCAATAACTTTCATGAAGACATCAAAATGGTTGCTTTTGAAAAGTTTCGGGGCCAAATCAAGTAGAAAGTATGAGAATAAGTGTGTACGTTTGGAAGTACAAAAACTAAAATAAACCAATGTCAGAAAGTACATTGACGACCAAAATTAACAAAAACTAGAAGTTGAAGGACTATAATAGTATTTAAACCTACTAACACGACCATTCACTATAAATAGATATTATTATACATTTTTCTCAACACGTGTCGATATATTAAAATCTCGATCTCCTGTGCACCCATTTTCCAACTACATGAATGTGATAGATTTCCTCTACTTAATTTATCTAAATTTACAAGGCTAAACTCAATAGTATCGAAAGTTATTTCAACACTCTTTCATCTCACGTGCTTCTAAACATTTATTTTCATTATACTTTTACACTTCGATTTTACCGAGTTAAAAAACAATAACAAATAACATAGAATGTATTACACGTGTATTTTCCTATTATGTAGACATAGCCGTACAAATTAAGAATGAACCGTGGTTATGAATTGTCATACCTAATTAGTTCCTAACTAATTGCTGGGTGGTAGAGAAATATGTGATATTGTGACAAAGTTGATTTGATGAAATTTGCAAAAATTAACCAAAGTTTGAATTTGTTAGGCATTTGTAGAATTGGAAGGGGATAAAGTTATTGGATGAGGATAAGGTGTAAATGCAAGCATGTGCAGTTCATTATTTTTAGCTCTACCTCTCTCCATTACCATTTCCCACAAGTTTACAATCTTTTTCTTTTTCTATATTAAATGTATAAATATCATTTCCTCAAGAACAGAAAAAAAAAGAAAAAAGAAAAAGAAAAAGTATATATATAAATAAACTTCCTTATATTTATTTTTATTGTATTTTCTTTTAAATTTTAATCCCAACCTTATATATACAAAAAAAACGATAACATTCTTGGATTTGTAAGAATTTTACAAACAAGAATAAAATGATGAGATGTTTAAAGATATAAACATCAAAATGAAGTTGATAAATGTAACAAATTAATATCTATAGATAATGATCGTTGAACTATGTTTACTTTAATAATAAATTGCAAAAACGAAAATCGACCAACTTGTAAAGAAAGAATGACCATAGGTGTTATAGTCGAGCTAAATTCGACATTAAATATACATAAATATGTGTGTATGTATTGGTTAATTTTGTGTGTGGAGTCCATTACCGGTGTCACTATCTCTCTCTCTCACTCCGCCCACGACTGGCTATATTTTTTTTCATTCTTTCCTTCATTCTCTTTCTCCCTCACTCTCAAGTCTCACATCTTTCTCTTCCCTCCTTAACTCTCCCTCTTTCTTACTTCTCATATCATCTCTCTCCTCACGTTCTCCATCTTCTTCCGTTCTCACTTCCTCTCTCTGCCTTTTCAGTTTTTTCCCTCTCTGCCATACTTTACTCAGTGTAATTTGTCCGGAAACATGCTCAAATGGGTGCCTGAATCGACTGCTCATCTTTGTCCGGCGAGAGATTAGGTCGAGTTCTCGTCATTCAACTTCAAAAACCTGTAACAGAGCGTTCAACCGGAGACATCTCAATCTTTCTCACCAGCGCTACTGCGAATCGTTATCTAGCATTGGGATTTGAGTCTATCATAGGTATTTTTCTTCCTTTCATACTTCTCTATTTAATTATCGTGGGCTTCAACTCTGAAAGTGTTACTAATCTTGAGTTCAATTCCGTTTTTTTTCTTCGTGTTTTTGTTATTATCATTATGATTCTTGTTTAGAGCTACTACTTATCAATTTTTGTTTTTAGTTTAGAATTTTCAATGAAGAAATGAGTTTGGGTTACTTTTTATTTGTTTATTTGAGTAGGGCTTGACCGGTTTAGAAGTGCGCGAAACCTGTTGTCGAGTAAAGTGATTTTTTTAAAAAAACAAAGACAATGTTAAATCGAATAGGTTAAAATAGTTTAGGGTTTATTGATAATGAGTAACATGTCTTTTCGAATTTCGAAGAGGAATTGAAAATTTACTCCACATTAAAAAGATAAATTAAAATTTTAAATATTTTTATGTTGTTTTATATTTAATTATCTTCTTTTGAAACACAATGATGAATTTTCATTTGACCGTAAAATTATCCCTCGGAATTTTTTTTTCTTCTTAATTTTAATGCTTAATTCGTAAATTTCCTTCCTATAAAAAAGTTGAATTTAGAGTTTAGTTTGCGACAATTTTTAAGATTTTTTTTAGGAAGGAGTAAATTATTAAGACTATGACACCATTTTAGATATTCTATTTTAGGGACTAGTCATATATTTTTTTAAAAAATTTGTATCCAAATAGTAAAAACATTTATAAAAAATAGCGTATAATTTTTTTTTTATTTTGGACTAGTAATTAGAGGATTATTAATTTTTTAATTTGTTATTTTTGTAATTTAAATAATGTAATACCTTCTATTATCATAAATTTTATTTTTTTATTTACAAAGGCTTACTTTCCAATTTAAATCATATATTTAAAATGAGATTAAATTATTTTTTAAATGGTACCAAATTTAGAATTAACCTGTTTTTGATTTAAATATATGAATTAGAATCGTTGGGAATATATTTGTCTTAATTAGTTGAATAAGGTTGGTATGATTTTGTGGAAAACTGATTCCACCAAATTGAATTGTTGTTTATTTTGACTAATTTTGACTTAAGTTCTTACTGTTTTTTCTGATTACGTAGTCTATTAAACTCATGTATAGTTTCTCAGTTATAATAATTCCCTAAATTTAAATTCCACTTGAGTGTAAAAGGGAAAATAGAAGTTGAATTCATCAAAATGACCACATTAAATGGATAGATTAATGACATTTTTCCCCCCTTCTTTAGAGTGGTAGCAAGGTTTGAAGTTTTGCACTTTTCATAAAGATTATTTAATGGGGGATTATTATTTTAACTAACCAACTCTACTGCTGCTCTAAACGCTACATGCAGTTGCTCTCTGTTTCTGCATTTTTTTTTTTTAATTTTTGGAAGCTGATGGGCTTCTCATTTTCTGCTCCAGAATTTTCACCGTTGATTTCTCGCTTGGTTTGATATCCTTTTGTTATTTCGGTAATCTGAGGAAACACTTTCTTGCCTTGTATTTGGTGGTTTGGTTTGTAGTGTTTGGTGACCATTGGAGATTTTGA

mRNA sequence

ATGGCAAGTGGAAACCAAAGCATGGCTCGTGATTGGGTACGGCAAAGGCAGGAGCGGCGCGTGGTGGTGCGGTCGTTTGGTGCTACCAAAGCAGAGTACCACGAGCGTTCAACCGGAGACATCTCAATCTTTCTCACCAGCGCTACTGCGAATCGTTATCTAGCATTGGGATTTGAGTCTATCATAGTGTTTGGTGACCATTGGAGATTTTGA

Coding sequence (CDS)

ATGGCAAGTGGAAACCAAAGCATGGCTCGTGATTGGGTACGGCAAAGGCAGGAGCGGCGCGTGGTGGTGCGGTCGTTTGGTGCTACCAAAGCAGAGTACCACGAGCGTTCAACCGGAGACATCTCAATCTTTCTCACCAGCGCTACTGCGAATCGTTATCTAGCATTGGGATTTGAGTCTATCATAGTGTTTGGTGACCATTGGAGATTTTGA

Protein sequence

MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFESIIVFGDHWRF*
Homology
[Close]
BLAST of Csa1G008510.1 vs. TrEMBL
Match: A0A0A0LP17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008510 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.8e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES 60
          MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES
Sbjct: 1  MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES 60

Query: 61 IIVFGDHWRF 71
          IIVFGDHWRF
Sbjct: 61 IIVFGDHWRF 70

[Close]
BLAST of Csa1G008510.1 vs. NCBI nr
Match: gi|700208549|gb|KGN63645.1| (hypothetical protein Csa_1G008510 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES 60
          MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES
Sbjct: 1  MASGNQSMARDWVRQRQERRVVVRSFGATKAEYHERSTGDISIFLTSATANRYLALGFES 60

Query: 61 IIVFGDHWRF 71
          IIVFGDHWRF
Sbjct: 61 IIVFGDHWRF 70

The following BLAST results are available for this feature:
BLAST of Csa1G008510.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP17_CUCSA8.8e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008510 PE=4 SV=1[more]
BLAST of Csa1G008510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208549|gb|KGN63645.1|1.3e-31100.00hypothetical protein Csa_1G008510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G008510Csa1G008510gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G008510.1Csa1G008510.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G008510.1.cds1Csa1G008510.1.cds1CDS
Csa1G008510.1.cds2Csa1G008510.1.cds2CDS
Csa1G008510.1.cds3Csa1G008510.1.cds3CDS