Csa1G002950.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G002950.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 565892 .. 566441 (+)
Sequence length390
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATGTAACACGTGTGAGTTCTCCATTTCTCTTTTTCTTTTCTACTTTATTTTTAATTTCTCTAACGGCCGATTTGAATTTGCAGTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGGTTGGAGTGTATAATATAAACAAATAAATGATCGGAAATTACGACGGAGGGTAAAACGGGGTAATGAATTTTGGGGGAGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

mRNA sequence

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Coding sequence (CDS)

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Protein sequence

MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQPPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGVPFLGFGDQS*
Homology
[Close]
BLAST of Csa1G002950.1 vs. TrEMBL
Match: A0A0A0LU65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002950 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

[Close]
BLAST of Csa1G002950.1 vs. NCBI nr
Match: gi|700208430|gb|KGN63526.1| (hypothetical protein Csa_1G002950 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

The following BLAST results are available for this feature:
BLAST of Csa1G002950.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU65_CUCSA1.1e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002950 PE=4 SV=1[more]
BLAST of Csa1G002950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208430|gb|KGN63526.1|1.6e-69100.00hypothetical protein Csa_1G002950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G002950Csa1G002950gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G002950.1Csa1G002950.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G002950.1.cds1Csa1G002950.1.cds1CDS
Csa1G002950.1.cds2Csa1G002950.1.cds2CDS
Csa1G002950.1.cds3Csa1G002950.1.cds3CDS