Csa1G002950 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G002950
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 565892 .. 566441 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATGTAACACGTGTGAGTTCTCCATTTCTCTTTTTCTTTTCTACTTTATTTTTAATTTCTCTAACGGCCGATTTGAATTTGCAGTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGGTTGGAGTGTATAATATAAACAAATAAATGATCGGAAATTACGACGGAGGGTAAAACGGGGTAATGAATTTTGGGGGAGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

mRNA sequence

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Coding sequence (CDS)

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Protein sequence

MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQPPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGVPFLGFGDQS*
Homology
[Close]
BLAST of Csa1G002950 vs. TrEMBL
Match: A0A0A0LU65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002950 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

[Close]
BLAST of Csa1G002950 vs. NCBI nr
Match: gi|700208430|gb|KGN63526.1| (hypothetical protein Csa_1G002950 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

The following BLAST results are available for this feature:
BLAST of Csa1G002950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU65_CUCSA1.1e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002950 PE=4 SV=1[more]
BLAST of Csa1G002950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208430|gb|KGN63526.1|1.6e-69100.00hypothetical protein Csa_1G002950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU092117cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G002950.1Csa1G002950.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU092117CU092117transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G002950Silver-seed gourdcarcuB0391
Csa1G002950Silver-seed gourdcarcuB0394
Csa1G002950Silver-seed gourdcarcuB1062
Csa1G002950Watermelon (97103) v2cuwmbB074
Csa1G002950Watermelon (97103) v2cuwmbB078
Csa1G002950Watermelon (97103) v2cuwmbB090
Csa1G002950Wax gourdcuwgoB007
Csa1G002950Wax gourdcuwgoB078
Csa1G002950Wax gourdcuwgoB118
Csa1G002950Cucumber (Chinese Long) v2cucuB014
Csa1G002950Watermelon (97103) v1cuwmB093
Csa1G002950Watermelon (97103) v1cuwmB094
Csa1G002950Cucumber (Gy14) v1cgycuB299
Csa1G002950Cucumber (Gy14) v1cgycuB475
Csa1G002950Cucurbita maxima (Rimu)cmacuB048
Csa1G002950Cucurbita maxima (Rimu)cmacuB086
Csa1G002950Cucurbita maxima (Rimu)cmacuB108
Csa1G002950Cucurbita maxima (Rimu)cmacuB113
Csa1G002950Cucurbita maxima (Rimu)cmacuB236
Csa1G002950Cucurbita moschata (Rifu)cmocuB076
Csa1G002950Cucurbita moschata (Rifu)cmocuB037
Csa1G002950Cucurbita moschata (Rifu)cmocuB085
Csa1G002950Cucurbita moschata (Rifu)cmocuB099
Csa1G002950Cucurbita moschata (Rifu)cmocuB223
Csa1G002950Melon (DHL92) v3.5.1cumeB054
Csa1G002950Watermelon (Charleston Gray)cuwcgB002
Csa1G002950Watermelon (Charleston Gray)cuwcgB005
Csa1G002950Watermelon (Charleston Gray)cuwcgB074
Csa1G002950Watermelon (Charleston Gray)cuwcgB081
Csa1G002950Watermelon (97103) v1cuwmB005
Csa1G002950Watermelon (97103) v1cuwmB002
Csa1G002950Cucurbita pepo (Zucchini)cpecuB361
Csa1G002950Cucurbita pepo (Zucchini)cpecuB650
Csa1G002950Cucurbita pepo (Zucchini)cpecuB653
Csa1G002950Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G002950Bottle gourd (USVL1VR-Ls)culsiB045
Csa1G002950Cucumber (Gy14) v2cgybcuB001
Csa1G002950Cucumber (Gy14) v2cgybcuB098
Csa1G002950Melon (DHL92) v3.6.1cumedB046