Csa1G000620.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G000620.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 88982 .. 89296 (-)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

mRNA sequence

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Coding sequence (CDS)

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Protein sequence

MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIHKSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF*
Homology
[Close]
BLAST of Csa1G000620.1 vs. TrEMBL
Match: A0A0A0LNQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000620 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

[Close]
BLAST of Csa1G000620.1 vs. NCBI nr
Match: gi|700208342|gb|KGN63438.1| (hypothetical protein Csa_1G000620 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

The following BLAST results are available for this feature:
BLAST of Csa1G000620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNQ9_CUCSA1.9e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000620 PE=4 SV=1[more]
BLAST of Csa1G000620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208342|gb|KGN63438.1|2.8e-51100.00hypothetical protein Csa_1G000620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G000620Csa1G000620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G000620.1Csa1G000620.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G000620.1.cds1Csa1G000620.1.cds1CDS