Csa1G000620 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G000620
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 88982 .. 89296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

mRNA sequence

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Coding sequence (CDS)

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Protein sequence

MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIHKSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF*

Homology

[Close]

BLAST of Csa1G000620 vs. TrEMBL
Match: A0A0A0LNQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000620 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

[Close]

BLAST of Csa1G000620 vs. NCBI nr
Match: gi|700208342|gb|KGN63438.1| (hypothetical protein Csa_1G000620 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

The following BLAST results are available for this feature:

BLAST of Csa1G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNQ9_CUCSA	1.9e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000620 PE=4 SV=1	[more]

BLAST of Csa1G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208342\|gb\|KGN63438.1\|	2.8e-51	100.00	hypothetical protein Csa_1G000620 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G000620.1	Csa1G000620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G000620	Melon (DHL92) v3.5.1	cumeB022
Csa1G000620	Melon (DHL92) v3.5.1	cumeB054
Csa1G000620	Melon (DHL92) v3.5.1	cumeB078
Csa1G000620	Watermelon (Charleston Gray)	cuwcgB052
Csa1G000620	Watermelon (Charleston Gray)	cuwcgB081
Csa1G000620	Watermelon (97103) v1	cuwmB028
Csa1G000620	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G000620	Cucurbita pepo (Zucchini)	cpecuB513
Csa1G000620	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G000620	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G000620	Bottle gourd (USVL1VR-Ls)	culsiB041
Csa1G000620	Cucumber (Gy14) v2	cgybcuB001
Csa1G000620	Cucumber (Gy14) v2	cgybcuB014
Csa1G000620	Cucumber (Gy14) v2	cgybcuB096
Csa1G000620	Melon (DHL92) v3.6.1	cumedB018
Csa1G000620	Melon (DHL92) v3.6.1	cumedB046
Csa1G000620	Silver-seed gourd	carcuB0391
Csa1G000620	Silver-seed gourd	carcuB0636
Csa1G000620	Watermelon (97103) v2	cuwmbB050
Csa1G000620	Watermelon (97103) v2	cuwmbB078
Csa1G000620	Wax gourd	cuwgoB061
Csa1G000620	Wax gourd	cuwgoB079
Csa1G000620	Cucumber (Chinese Long) v2	cucuB002
Csa1G000620	Cucumber (Chinese Long) v2	cucuB014
Csa1G000620	Watermelon (97103) v1	cuwmB094
Csa1G000620	Cucumber (Gy14) v1	cgycuB224
Csa1G000620	Cucurbita maxima (Rimu)	cmacuB048
Csa1G000620	Cucurbita maxima (Rimu)	cmacuB086
Csa1G000620	Cucurbita maxima (Rimu)	cmacuB225
Csa1G000620	Cucurbita moschata (Rifu)	cmocuB076
Csa1G000620	Cucurbita moschata (Rifu)	cmocuB037
Csa1G000620	Cucurbita moschata (Rifu)	cmocuB211