CsGy7G007840.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy7G007840.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr7 : 5897682 .. 5900334 (+)
Sequence length267
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTGGAAGTAATCAAATATCACAAATGAGATTTTTATAAAATCAATTTATACCTTTTGTATCATCATAGTTAGTCGTTCAATCTGCCACAAACAAAATGATGTTAAAATATCAAAAATCAAACATTTAAACCAACAATTAACTAAAATAATAAGAATGGTCTCTGAAAAAACACTTCATTGATTTATGTACTTTGAGCATTAGTCTCTTTTAATTTCATCAATGAAACATCTTGTTTCCTTTTCGAAAGAGACAATCAATAAGAACACTACATTAATAAGAAAGCCTTAGAAGACATGACATGAAACAAATACAGCAAAGATTTGCGAGAAAAAGTCAAATAGGTGAAAGCATATGAACTCCCAAGTAAAAATTTTAGAACTTTGAAACAACACATGGGGTTGATGGGATCTTAGTTGCACTGCAAGAAAAACCTTGCAAATACAACAGCCAGTAGTAGTAGTTTAGCGAGCACAGTCTTTTTTTTATCTATCAAGATGGAGTTTTTTAAAACTATACATAGATAATATATATTTTTGAAATGGAAACAAGATTTTTTCGCTATTAATGAAATGAATCTAATGCTCAAAGTACAAGATACAAAGCAAAAGGGGACTTAACAACACTTGAAGATACTAGACCATTACTAAACCAATACAATGATGGAACTGAAAAGATCAATCCTTCTATAATAAAGAGGCCAAACTAAATAACTAAATCCCAATAAACAAAAGGATACCCTAAACCCGAAACAGAAGCACAAAAAAGAAAAAAAGTTAACTAGGTAGGTTCTCTCTCCTCTCTCTCATCTCTGTCCACCTCTGTTCCGGCCACGGTTTTTCTCAGTGAACTTCAGGCGTATTCAACAGACTCAGAAATGGCAGTGAAGAGTTGAAAAATCATAGATTCCTACAACTGCACTGGTTCGAAAAGGGGCTGTCTCACATCCAAGATGTAGATTTTCGAAAAACTCTCCGTTTATCCAAGCACCAACTAGAATGGTTTGTTGTTTGAATTTCAGGTCTCGTCAAAGAACCTGATTGGAAGTTCTTCAAAAAAACCAAATATGATCGGAAGGAAGCTACAAGACTGACAAAATTCTGAACCCCATTAGATTAGTTTATGAGGTGTGTTGCTCAAAGTGCCTCTGGAATCCAATCATTTATTTGTATCTTCTCAAAGCAAGGATGGTTTTTCTTCCTGAATATGATTAAAAAATTTTTGAAGATCTATGACTACACACTACGGCAATCCACACTACACTCCGATTCTGACCAGTTAGGGTTGCGAACATCCCACCTTCTAGGTTCAAGTTATGCAGATAAATTCAAGTTCTCCGGAAAGGAAATTCACTCTGTTTTTAGTACTAGAAAACAGAGTTTAGATTTTGTCTCAAAAAATATGAATCAACCTTCAAGTGGAAGACCAAAACAAAGCATAGGAACATTTCCTACTTCTACTGGCCATGATCAAGAACAGAAGTACTGGGTTCGGAAGTCAGAAGACATTTAGAAGAAGAATTCTCAAATTTCTGGATACTTACAAGATTATTTGCATTTGACGAGGAAGGATATTAGAGTTCATTTGGAGGAATTGGTTCACCCAAAAATAAGCATCAATCCGCTATTTGCAGACAAAGCCGTTTTCAAAGTAACTCAAGGAAAGCTTGAAGATCTGATTATCACTCCAGGAAAGTGGTTCGATTACAGGAAATACCATCTTCTCTTTGAAAAATGGGATGAAGATAAGCACAGTAGACCAACTCTCATGGCAAGTTTTAGAGGGCGGCTATCAATAAAGAACCTCCATCTCAACCTTTGGCGAAAAGAGATCTTTGAAGTTATCAGTGTATATTTTGGAGGTCCAGATTGCATAGCATTGGACACTATCAATCTTATTAATTGCTCCAAAGGAAAAATTCAAGTACAAAAGAACGTATGTGGCTTCTTACCAGCTACTATTGAACTAAAGAGTTGAAACAGGGGAAGTTTTTTTCTTAACTTTGGCGAGTTTGAGCCAGCTGAAGTTCCAGAGTTCGTTAAAAAAGATTTATTTCTTAGTGATTTCACTGATCCGATTGATTTGAGTAGATTAAATTCAGTCGCCATCGATGAAGATGTTCTGGTGGAAGTTCTAGTAATGGGAAAACATCTATTTATGCAGAAAATTCCGTCGATTACAAGAAATTTGTTTGAAGCTTTGAGAAACGTCATGGAAGACGAAAAGACTATTCTGCCGGACACTGCCACAGCCAATACACTCTCACAGAAGTACAACACAGTTCAAGCACCAAAATTCAAAAACACGTGAAGAAGAGGGAGAGTCATGCGTCATTGGAAAATTAATGATGCCTTTGATGAAAGAGAAAATTGCCGGCCAAAAAATTAATTGCAGCAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

mRNA sequence

GCACTGGAACAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

Coding sequence (CDS)

GCACTGGAACAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

Protein sequence

ALEQKPVPLPKNHPGASPSDESYALFRISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSENKK
Homology
[Close]
BLAST of CsGy7G007840.1 vs. NCBI nr
Match: KGN44029.1 (hypothetical protein Csa_7G113330 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 28 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 87
          ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN
Sbjct: 33 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 92

Query: 88 KK 90
          KK
Sbjct: 93 KK 94

[Close]
BLAST of CsGy7G007840.1 vs. TrEMBL
Match: tr|A0A0A0K539|A0A0A0K539_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G113330 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 28 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 87
          ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN
Sbjct: 33 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 92

Query: 88 KK 90
          KK
Sbjct: 93 KK 94

The following BLAST results are available for this feature:
BLAST of CsGy7G007840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44029.11.7e-26100.00hypothetical protein Csa_7G113330 [Cucumis sativus][more]
BLAST of CsGy7G007840.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy7G007840.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy7G007840.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K539|A0A0A0K539_CUCSA1.2e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G113330 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy7G007840CsGy7G007840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G007840.1.exon.1CsGy7G007840.1.exon.1exon
CsGy7G007840.1.exon.2CsGy7G007840.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G007840.1.CDS.1CsGy7G007840.1.CDS.1CDS
CsGy7G007840.1.CDS.2CsGy7G007840.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy7G007840.1CsGy7G007840.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..89