CsGy7G007840 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G007840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr7 : 5897682 .. 5900334 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTGGAAGTAATCAAATATCACAAATGAGATTTTTATAAAATCAATTTATACCTTTTGTATCATCATAGTTAGTCGTTCAATCTGCCACAAACAAAATGATGTTAAAATATCAAAAATCAAACATTTAAACCAACAATTAACTAAAATAATAAGAATGGTCTCTGAAAAAACACTTCATTGATTTATGTACTTTGAGCATTAGTCTCTTTTAATTTCATCAATGAAACATCTTGTTTCCTTTTCGAAAGAGACAATCAATAAGAACACTACATTAATAAGAAAGCCTTAGAAGACATGACATGAAACAAATACAGCAAAGATTTGCGAGAAAAAGTCAAATAGGTGAAAGCATATGAACTCCCAAGTAAAAATTTTAGAACTTTGAAACAACACATGGGGTTGATGGGATCTTAGTTGCACTGCAAGAAAAACCTTGCAAATACAACAGCCAGTAGTAGTAGTTTAGCGAGCACAGTCTTTTTTTTATCTATCAAGATGGAGTTTTTTAAAACTATACATAGATAATATATATTTTTGAAATGGAAACAAGATTTTTTCGCTATTAATGAAATGAATCTAATGCTCAAAGTACAAGATACAAAGCAAAAGGGGACTTAACAACACTTGAAGATACTAGACCATTACTAAACCAATACAATGATGGAACTGAAAAGATCAATCCTTCTATAATAAAGAGGCCAAACTAAATAACTAAATCCCAATAAACAAAAGGATACCCTAAACCCGAAACAGAAGCACAAAAAAGAAAAAAAGTTAACTAGGTAGGTTCTCTCTCCTCTCTCTCATCTCTGTCCACCTCTGTTCCGGCCACGGTTTTTCTCAGTGAACTTCAGGCGTATTCAACAGACTCAGAAATGGCAGTGAAGAGTTGAAAAATCATAGATTCCTACAACTGCACTGGTTCGAAAAGGGGCTGTCTCACATCCAAGATGTAGATTTTCGAAAAACTCTCCGTTTATCCAAGCACCAACTAGAATGGTTTGTTGTTTGAATTTCAGGTCTCGTCAAAGAACCTGATTGGAAGTTCTTCAAAAAAACCAAATATGATCGGAAGGAAGCTACAAGACTGACAAAATTCTGAACCCCATTAGATTAGTTTATGAGGTGTGTTGCTCAAAGTGCCTCTGGAATCCAATCATTTATTTGTATCTTCTCAAAGCAAGGATGGTTTTTCTTCCTGAATATGATTAAAAAATTTTTGAAGATCTATGACTACACACTACGGCAATCCACACTACACTCCGATTCTGACCAGTTAGGGTTGCGAACATCCCACCTTCTAGGTTCAAGTTATGCAGATAAATTCAAGTTCTCCGGAAAGGAAATTCACTCTGTTTTTAGTACTAGAAAACAGAGTTTAGATTTTGTCTCAAAAAATATGAATCAACCTTCAAGTGGAAGACCAAAACAAAGCATAGGAACATTTCCTACTTCTACTGGCCATGATCAAGAACAGAAGTACTGGGTTCGGAAGTCAGAAGACATTTAGAAGAAGAATTCTCAAATTTCTGGATACTTACAAGATTATTTGCATTTGACGAGGAAGGATATTAGAGTTCATTTGGAGGAATTGGTTCACCCAAAAATAAGCATCAATCCGCTATTTGCAGACAAAGCCGTTTTCAAAGTAACTCAAGGAAAGCTTGAAGATCTGATTATCACTCCAGGAAAGTGGTTCGATTACAGGAAATACCATCTTCTCTTTGAAAAATGGGATGAAGATAAGCACAGTAGACCAACTCTCATGGCAAGTTTTAGAGGGCGGCTATCAATAAAGAACCTCCATCTCAACCTTTGGCGAAAAGAGATCTTTGAAGTTATCAGTGTATATTTTGGAGGTCCAGATTGCATAGCATTGGACACTATCAATCTTATTAATTGCTCCAAAGGAAAAATTCAAGTACAAAAGAACGTATGTGGCTTCTTACCAGCTACTATTGAACTAAAGAGTTGAAACAGGGGAAGTTTTTTTCTTAACTTTGGCGAGTTTGAGCCAGCTGAAGTTCCAGAGTTCGTTAAAAAAGATTTATTTCTTAGTGATTTCACTGATCCGATTGATTTGAGTAGATTAAATTCAGTCGCCATCGATGAAGATGTTCTGGTGGAAGTTCTAGTAATGGGAAAACATCTATTTATGCAGAAAATTCCGTCGATTACAAGAAATTTGTTTGAAGCTTTGAGAAACGTCATGGAAGACGAAAAGACTATTCTGCCGGACACTGCCACAGCCAATACACTCTCACAGAAGTACAACACAGTTCAAGCACCAAAATTCAAAAACACGTGAAGAAGAGGGAGAGTCATGCGTCATTGGAAAATTAATGATGCCTTTGATGAAAGAGAAAATTGCCGGCCAAAAAATTAATTGCAGCAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

mRNA sequence

GCACTGGAACAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

Coding sequence (CDS)

GCACTGGAACAAAAGCCAGTTCCCCTCCCAAAAAACCACCCTGGCGCTTCTCCTTCAGATGAATCCTATGCATTATTTAGGATTAGCTCACAAGCGGTGGACCCCACAAAAGCATTCAATAAAGTAACGCCTAGCTTTTGGTATGCATATGGGGAAGAGGAAGAACCCGCAGCTAATTCTCCTAAGTCCACAATCGTCTATTCTAACAGCTTTTCATTTCCTCCTTCCCCTCAGATTCACCCAACCACTTCTTCAGAAAATAAAAAA

Protein sequence

ALEQKPVPLPKNHPGASPSDESYALFRISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSENKK
Homology
[Close]
BLAST of CsGy7G007840 vs. NCBI nr
Match: KGN44029.1 (hypothetical protein Csa_7G113330 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 28 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 87
          ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN
Sbjct: 33 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 92

Query: 88 KK 90
          KK
Sbjct: 93 KK 94

[Close]
BLAST of CsGy7G007840 vs. TrEMBL
Match: tr|A0A0A0K539|A0A0A0K539_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G113330 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 28 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 87
          ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN
Sbjct: 33 ISSQAVDPTKAFNKVTPSFWYAYGEEEEPAANSPKSTIVYSNSFSFPPSPQIHPTTSSEN 92

Query: 88 KK 90
          KK
Sbjct: 93 KK 94

The following BLAST results are available for this feature:
BLAST of CsGy7G007840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44029.11.7e-26100.00hypothetical protein Csa_7G113330 [Cucumis sativus][more]
BLAST of CsGy7G007840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy7G007840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy7G007840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K539|A0A0A0K539_CUCSA1.2e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G113330 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G007840.1CsGy7G007840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..89

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy7G007840Csa7G113330Cucumber (Chinese Long) v2cgybcuB324
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G007840Cucurbita maxima (Rimu)cgybcmaB884
CsGy7G007840Cucurbita maxima (Rimu)cgybcmaB942
CsGy7G007840Cucurbita moschata (Rifu)cgybcmoB924
CsGy7G007840Cucurbita moschata (Rifu)cgybcmoB866
CsGy7G007840Cucurbita pepo (Zucchini)cgybcpeB948
CsGy7G007840Cucurbita pepo (Zucchini)cgybcpeB980
CsGy7G007840Bottle gourd (USVL1VR-Ls)cgyblsiB481
CsGy7G007840Melon (DHL92) v3.5.1cgybmeB463
CsGy7G007840Melon (DHL92) v3.6.1cgybmedB457
CsGy7G007840Melon (DHL92) v3.6.1cgybmedB476
CsGy7G007840Watermelon (97103) v1cgybwmB523
CsGy7G007840Watermelon (Charleston Gray)cgybwcgB480
CsGy7G007840Wild cucumber (PI 183967)cgybcpiB332
CsGy7G007840Silver-seed gourdcarcgybB0871
CsGy7G007840Silver-seed gourdcarcgybB0894
CsGy7G007840Cucumber (Chinese Long) v3cgybcucB348
CsGy7G007840Watermelon (97103) v2cgybwmbB537
CsGy7G007840Wax gourdcgybwgoB666