CsGy7G002700.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G002700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 2163808 .. 2164373 (-)
Sequence length	416

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGGTAACCGCAGTTACGGCCACGAACGACATAAAATCTAGTGAGTCTAATCATTTATTAGATGATACATTGCAACACACTCTTTACTTATACTCATTTCATTAGTGTTATATGTGTGTGTTGATTCTCATGAGATATTCATTAACATTGTAGATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAATCTGCTGATGATCAGGCCCTGGTTGATGTACAATCTCAAGCCAAAAGTTTAACAACAAATCCTACTTTGTTGCTTTGTTTTTTGATTTCTCAAGTTCATATATTATATAATAATGTCTGCAGTCCAGTGTGTTTGCTTTTAAGTACTGAATAAATGCTTTGTTATGAAAAAAAAAAAGTAATGAATAAATGGAATGGCTTGAGATTGACT

mRNA sequence

ATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAATCTGCTGATGATCAGGCCCTGGTTGATGTACAATCTCAAGCCAAAAGTTTAACAACAAATCCTACTTTGTTGCTTTGTTTTTTGATTTCTCAAGTTCATATATTATATAATAATGTCTGCAGTCCAGTGTGTTTGCTTTTAAGTACTGAATAAATGCTTTGTTATGAAAAAAAAAAAGTAATGAATAAATGGAATGGCTTGAGATTGACT

Coding sequence (CDS)

ATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAATCTGCTGATGATCAGGCCCTGGTTGATGTACAATCTCAAGCCAAAAGTTTAA

Protein sequence

MNSKAFILLGLLFAAVILEMKLLSKQMKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV

Homology

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BLAST of CsGy7G002700.1 vs. NCBI nr
Match: KGN43449.1 (hypothetical protein Csa_7G037530 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 27 MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV 86
          MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV
Sbjct: 1  MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV 59

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BLAST of CsGy7G002700.1 vs. TrEMBL
Match: tr|A0A0A0K399|A0A0A0K399_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037530 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 27 MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV 86
          MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV
Sbjct: 1  MKSMMSSTTIWEEKMLHLPNATTIATKVAASVPMVIASSAATNLLMIRPWLMYNLKPKV 59

The following BLAST results are available for this feature:

BLAST of CsGy7G002700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43449.1	7.3e-22	100.00	hypothetical protein Csa_7G037530 [Cucumis sativus]	[more]

BLAST of CsGy7G002700.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G002700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G002700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K399\|A0A0A0K399_CUCSA	4.8e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037530 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G002700	CsGy7G002700	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002700.1.CDS.2	CsGy7G002700.1.CDS.2	CDS
CsGy7G002700.1.CDS.1	CsGy7G002700.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002700.1.exon.2	CsGy7G002700.1.exon.2	exon
CsGy7G002700.1.exon.1	CsGy7G002700.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002700.1.three_prime_UTR.1	CsGy7G002700.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G002700.1	CsGy7G002700.1-protein	polypeptide