CsGy7G000050.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy7G000050.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein RADIALIS-like 1
LocationChr7 : 54020 .. 55763 (+)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAGCTTTCGAGTTAATTGGTGGATTATTACATGGTATTAGAGTATCACAGTTCAGTTTGTTTCTAAAATGTCATTCTCTGTACATCTCGTTGGATCTTAATTCTAATATATTTTGAAGCCTACAAGTGAAACGAGAGTGTTAAGGTATTGATATATAGCTAAATTTAGTGTTAATGTATTGACATATATATTTTGAACTCAATTTTTGTTTTGAACTTAATACTTGTATACCTTTATACAGATAAACACACGAGAATCTACCTTAAAACAATTGATTATAAGAGAGAAGTAATTCGTCTATTTTATATTATTCATTTTCTTAAAAATGGTATTATTTACGATATTCTCTTTATAATTAATATTATATTTTTTTAATCTCACCATTGTTAAGCTGATCTAAATACAACATTCGTTTCGATTTTCGTGTTTATACGTGATAATATGTAGTTAGGAATTTTTTTTCCAATATTTCCATCAATAAAAATTTTATCTATGAAAATCAAGTTTTTATATATTGATACATTTTCTGGTAGAAGTTTCTGTAACACATTATTTTATTTAGAGAGCACATAATATCTAAAAAAGTTGGATTAAATCATTATCTTTATAGTAATTAATACAGTGTAGTATTAATATAGAAGATCACCTTATATTTGAAACGTATATTTTTGTCTCTAATAACTAGTCATGTTTTCAACTGATCTAGTTGATTTCAAACGAGGTACCCTAATTATTTTTCATGGAAAAAGAAAAACAAACAAACCCTCCTCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAATGTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACATCTATACAGTACAGGAATAATAATAATAGAATAATATATCATTTTTAGAAATTAACATGTTGTTGTTGTCATTACTTTATTAGGTTTTTGACTCTTTGTTTTTTTATTCTTAGGATGAGGAACATGAAGTTCCACCATGACATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAAGCTTTTGCTCTAATTTATATATAAAATATGACATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATGATTTGTGTTAAGCTTTAAAGTTATTGGTTAATTCCATGTATTATTGTACATCAACTTTTGATTTTGGAAGGATCAAAAGATTCAAATGAATCATTCCTTCCTTTTTCTTGAGGTTAATTAATGAGTACTTGTGTTTAAGATAACGAAGAAATCTACTCATGATATGG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGATGAGGAACATGAAGTTCCACCATGACATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAAGCTTTTGCTCTAATTTATATATAAAATATGACATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATGATTTGTGTTAAGCTTTAAAGTTATTGGTTAATTCCATGTATTATTGTACATCAACTTTTGATTTTGGAAGGATCAAAAGATTCAAATGAATCATTCCTTCCTTTTTCTTGAGGTTAATTAATGAGTACTTGTGTTTAAGATAACGAAGAAATCTACTCATGATATGG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGATGAGGAACATGAAGTTCCACCATGACATTTGA

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKMRNMKFHHDI
Homology
[Close]
BLAST of CsGy7G000050.1 vs. NCBI nr
Match: XP_004151125.2 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical protein Csa_7G170600 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. NCBI nr
Match: XP_022952072.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVK 63
          DVK
Sbjct: 61 DVK 63

[Close]
BLAST of CsGy7G000050.1 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-22
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

[Close]
BLAST of CsGy7G000050.1 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-21
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

[Close]
BLAST of CsGy7G000050.1 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 92.8 bits (229), Expect = 9.2e-20
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]
BLAST of CsGy7G000050.1 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]
BLAST of CsGy7G000050.1 vs. TAIR10
Match: AT4G36570.1 (RAD-like 3)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-17
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY 55
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHY 54

[Close]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-21
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

[Close]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-20
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

[Close]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match: tr|A0A0A0K348|A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT  QNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match: tr|A0A2R6R1N4|A0A2R6R1N4_ACTCH (Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11166 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-21
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSS GSG+WT  +NKAFEKALAV+D+DTPDRW NVAKAVGGKTAEEVKRHY +LVED
Sbjct: 1  MASMSSRGSGSWTAKENKAFEKALAVFDRDTPDRWHNVAKAVGGKTAEEVKRHYEILVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

The following BLAST results are available for this feature:
BLAST of CsGy7G000050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151125.21.1e-26100.00PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical pr... [more]
XP_008447024.15.4e-2698.39PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
XP_022136064.13.3e-2390.32protein RADIALIS-like 1 [Momordica charantia][more]
XP_022952072.12.8e-2290.48protein RADIALIS-like 1 [Cucurbita moschata][more]
XP_008447025.13.6e-2283.87PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
BLAST of CsGy7G000050.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21650.13.4e-2278.33Homeodomain-like superfamily protein[more]
AT4G39250.11.7e-2175.00RAD-like 1[more]
AT1G19510.19.2e-2072.13RAD-like 5[more]
AT1G75250.11.2e-1972.13RAD-like 6[more]
AT4G36570.19.5e-1770.37RAD-like 3[more]
BLAST of CsGy7G000050.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SIJ5|RADL2_ARATH6.1e-2178.33Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
sp|F4JVB8|RADL1_ARATH3.0e-2075.00Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
sp|Q8GW75|RADL5_ARATH1.7e-1872.13Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
sp|Q1A173|RADL6_ARATH2.2e-1872.13Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
sp|Q6NNN0|RADL3_ARATH8.2e-1868.85Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
BLAST of CsGy7G000050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K348|A0A0A0K348_CUCSA7.2e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1[more]
tr|A0A1S3BFW6|A0A1S3BFW6_CUCME3.6e-2698.39protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1[more]
tr|A0A1S3BGF6|A0A1S3BGF6_CUCME2.4e-2283.87protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1[more]
tr|A0A0A0K344|A0A0A0K344_CUCSA1.5e-2180.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1[more]
tr|A0A2R6R1N4|A0A2R6R1N4_ACTCH2.0e-2183.87Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy7G000050CsGy7G000050gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G000050.1.exon.1CsGy7G000050.1.exon.1exon
CsGy7G000050.1.exon.2CsGy7G000050.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G000050.1.CDS.1CsGy7G000050.1.CDS.1CDS
CsGy7G000050.1.CDS.2CsGy7G000050.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G000050.1.three_prime_UTR.1CsGy7G000050.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy7G000050.1CsGy7G000050.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
e-value: 9.7E-7
score: 38.4
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..54
e-value: 6.2E-6
score: 26.2
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 11..54
e-value: 7.2842E-6
score: 37.555
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 10..59
e-value: 1.1E-19
score: 72.2
NoneNo IPR availablePANTHERPTHR43952FAMILY NOT NAMEDcoord: 1..63
NoneNo IPR availablePANTHERPTHR43952:SF14PROTEIN RADIALIS-LIKE 1-RELATEDcoord: 1..63
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 6..67