CsGy7G000050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G000050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RADIALIS-like 1
Location	Chr7 : 54020 .. 55763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAGCTTTCGAGTTAATTGGTGGATTATTACATGGTATTAGAGTATCACAGTTCAGTTTGTTTCTAAAATGTCATTCTCTGTACATCTCGTTGGATCTTAATTCTAATATATTTTGAAGCCTACAAGTGAAACGAGAGTGTTAAGGTATTGATATATAGCTAAATTTAGTGTTAATGTATTGACATATATATTTTGAACTCAATTTTTGTTTTGAACTTAATACTTGTATACCTTTATACAGATAAACACACGAGAATCTACCTTAAAACAATTGATTATAAGAGAGAAGTAATTCGTCTATTTTATATTATTCATTTTCTTAAAAATGGTATTATTTACGATATTCTCTTTATAATTAATATTATATTTTTTTAATCTCACCATTGTTAAGCTGATCTAAATACAACATTCGTTTCGATTTTCGTGTTTATACGTGATAATATGTAGTTAGGAATTTTTTTTCCAATATTTCCATCAATAAAAATTTTATCTATGAAAATCAAGTTTTTATATATTGATACATTTTCTGGTAGAAGTTTCTGTAACACATTATTTTATTTAGAGAGCACATAATATCTAAAAAAGTTGGATTAAATCATTATCTTTATAGTAATTAATACAGTGTAGTATTAATATAGAAGATCACCTTATATTTGAAACGTATATTTTTGTCTCTAATAACTAGTCATGTTTTCAACTGATCTAGTTGATTTCAAACGAGGTACCCTAATTATTTTTCATGGAAAAAGAAAAACAAACAAACCCTCCTCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAATGTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACATCTATACAGTACAGGAATAATAATAATAGAATAATATATCATTTTTAGAAATTAACATGTTGTTGTTGTCATTACTTTATTAGGTTTTTGACTCTTTGTTTTTTTATTCTTAGGATGAGGAACATGAAGTTCCACCATGACATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAAGCTTTTGCTCTAATTTATATATAAAATATGACATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATGATTTGTGTTAAGCTTTAAAGTTATTGGTTAATTCCATGTATTATTGTACATCAACTTTTGATTTTGGAAGGATCAAAAGATTCAAATGAATCATTCCTTCCTTTTTCTTGAGGTTAATTAATGAGTACTTGTGTTTAAGATAACGAAGAAATCTACTCATGATATGG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGATGAGGAACATGAAGTTCCACCATGACATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAAGCTTTTGCTCTAATTTATATATAAAATATGACATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATGATTTGTGTTAAGCTTTAAAGTTATTGGTTAATTCCATGTATTATTGTACATCAACTTTTGATTTTGGAAGGATCAAAAGATTCAAATGAATCATTCCTTCCTTTTTCTTGAGGTTAATTAATGAGTACTTGTGTTTAAGATAACGAAGAAATCTACTCATGATATGG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGATGAGGAACATGAAGTTCCACCATGACATTTGA

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKMRNMKFHHDI

Homology

[Close]

BLAST of CsGy7G000050 vs. NCBI nr
Match: XP_004151125.2 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical protein Csa_7G170600 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. NCBI nr
Match: XP_022952072.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVK 63
          DVK
Sbjct: 61 DVK 63

[Close]

BLAST of CsGy7G000050 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-22
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

[Close]

BLAST of CsGy7G000050 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-21
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

[Close]

BLAST of CsGy7G000050 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 92.8 bits (229), Expect = 9.2e-20
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CsGy7G000050 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CsGy7G000050 vs. TAIR10
Match: AT4G36570.1 (RAD-like 3)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-17
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY 55
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHY 54

[Close]

BLAST of CsGy7G000050 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-21
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

[Close]

BLAST of CsGy7G000050 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-20
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

[Close]

BLAST of CsGy7G000050 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CsGy7G000050 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CsGy7G000050 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of CsGy7G000050 vs. TrEMBL
Match: tr|A0A0A0K348|A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. TrEMBL
Match: tr|A0A1S3BFW6|A0A1S3BFW6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT  QNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

[Close]

BLAST of CsGy7G000050 vs. TrEMBL
Match: tr|A0A2R6R1N4|A0A2R6R1N4_ACTCH (Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11166 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-21
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSS GSG+WT  +NKAFEKALAV+D+DTPDRW NVAKAVGGKTAEEVKRHY +LVED
Sbjct: 1  MASMSSRGSGSWTAKENKAFEKALAVFDRDTPDRWHNVAKAVGGKTAEEVKRHYEILVED 60

Query: 61 VK 63
          VK
Sbjct: 61 VK 62

The following BLAST results are available for this feature:

BLAST of CsGy7G000050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151125.2	1.1e-26	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44080.1 hypothetical pr...	[more]
XP_008447024.1	5.4e-26	98.39	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022136064.1	3.3e-23	90.32	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022952072.1	2.8e-22	90.48	protein RADIALIS-like 1 [Cucurbita moschata]	[more]
XP_008447025.1	3.6e-22	83.87	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]

BLAST of CsGy7G000050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	3.4e-22	78.33	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.7e-21	75.00	RAD-like 1	[more]
AT1G19510.1	9.2e-20	72.13	RAD-like 5	[more]
AT1G75250.1	1.2e-19	72.13	RAD-like 6	[more]
AT4G36570.1	9.5e-17	70.37	RAD-like 3	[more]

BLAST of CsGy7G000050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SIJ5\|RADL2_ARATH	6.1e-21	78.33	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	3.0e-20	75.00	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q8GW75\|RADL5_ARATH	1.7e-18	72.13	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	2.2e-18	72.13	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	8.2e-18	68.85	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CsGy7G000050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K348\|A0A0A0K348_CUCSA	7.2e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1	[more]
tr\|A0A1S3BFW6\|A0A1S3BFW6_CUCME	3.6e-26	98.39	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
tr\|A0A1S3BGF6\|A0A1S3BGF6_CUCME	2.4e-22	83.87	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
tr\|A0A0A0K344\|A0A0A0K344_CUCSA	1.5e-21	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1	[more]
tr\|A0A2R6R1N4\|A0A2R6R1N4_ACTCH	2.0e-21	83.87	Protein RADIALIS-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G000050.1	CsGy7G000050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 9.7E-7 score: 38.4
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 e-value: 6.2E-6 score: 26.2
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 7.2842E-6 score: 37.555
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 10..59 e-value: 1.1E-19 score: 72.2
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 1..63
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 6..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G000050	Cucumber (Gy14) v2	cgybcgybB071
CsGy7G000050	Cucurbita maxima (Rimu)	cgybcmaB900
CsGy7G000050	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G000050	Cucurbita maxima (Rimu)	cgybcmaB956
CsGy7G000050	Cucurbita maxima (Rimu)	cgybcmaB961
CsGy7G000050	Watermelon (Charleston Gray)	cgybwcgB495
CsGy7G000050	Cucurbita moschata (Rifu)	cgybcmoB882
CsGy7G000050	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G000050	Cucurbita moschata (Rifu)	cgybcmoB940
CsGy7G000050	Cucurbita moschata (Rifu)	cgybcmoB944
CsGy7G000050	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G000050	Cucurbita pepo (Zucchini)	cgybcpeB920
CsGy7G000050	Cucurbita pepo (Zucchini)	cgybcpeB970
CsGy7G000050	Cucumber (Chinese Long) v2	cgybcuB295
CsGy7G000050	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G000050	Bottle gourd (USVL1VR-Ls)	cgyblsiB456
CsGy7G000050	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G000050	Melon (DHL92) v3.5.1	cgybmeB451
CsGy7G000050	Melon (DHL92) v3.5.1	cgybmeB469
CsGy7G000050	Melon (DHL92) v3.6.1	cgybmedB466
CsGy7G000050	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G000050	Watermelon (97103) v1	cgybwmB566
CsGy7G000050	Watermelon (97103) v1	cgybwmB571
CsGy7G000050	Wild cucumber (PI 183967)	cgybcpiB303
CsGy7G000050	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G000050	Silver-seed gourd	carcgybB0188
CsGy7G000050	Silver-seed gourd	carcgybB0326
CsGy7G000050	Cucumber (Chinese Long) v3	cgybcucB318
CsGy7G000050	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G000050	Watermelon (97103) v2	cgybwmbB492
CsGy7G000050	Watermelon (97103) v2	cgybwmbB502
CsGy7G000050	Wax gourd	cgybwgoB639
CsGy7G000050	Wax gourd	cgybwgoB653