CsGy6G032830.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGTAGCAACATTTTTCCTGCAACCTTCGTATGATTGTATGCAACTATTATGGTGGGAACAATTGATATATCACTTTTGTGGTTAATAAATTATGTTGCATCATTAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGTATTTGTTGTTACCTCATATTGCGCAAGAGCCTGAGAATAGAGACTGATTGGAAAGAGATAGTGTTCATTGAGGGATTTATTTTTCTTTATGAGTATCTACTTTGTTCCTTTCTACTTATTTGAATAATATATTTCCTTAATTATTTGCACCAGAGGATAATATTACAAGGCATAGTGACATACCCACTTTTGATTTTGCATTTTAATTTTGTATTTAAATGAAACCAATATACTTGTGCTACGAAGGAGGCAAATTCATCAGCAATTTCATTAACATATGTCCATGCATTGGAAATAGCAATTTTTTTGAAACAGAAAAAGATTTGTATATTGATTGTTATGGTCAGTTTACGTGTATCTTGAATCTCAAGGGAGTTCTGTCTAATAATTTTGCTATTTTTAATGTTTATAAGGTAATTGATCTATTATATTCGGTGTCAATATATTTTACTAGCTAGTTATCCTGCAAGATGCAAGTTTTGGGTAAGTTCTTAGAAGTGATTATTAAGTACTAAGCATCTCGAGTGATGACAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGGTAGCTAAGATTTTCTTTGAATAATGTTCAAAAGATTATTGCCAAAGATATTATACAATAGTTGCTAACATGCTGGATGATGATTACAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGGTATGTGTTTCTTTCTTTCTACCATTTTAGCAGGATGGATTATTTTATAAAATGGTTTGGCTCGCGTGCACATCCTAACAGATATTTTCTTTCCAGTTGCTTCTGAAACCTCATTTTGGGAAGTTTTTAACTTGCAGCTTCTGGTATTTGATAATTTGGACGTCACTACGCATAAGACGAAGAATATGGTGAAATATGTCAGTAAAATGGAGAATACCAAAAAAGTATTACTAGTTGATGGTGGTCCCATAGATGAGAAGCTGAAGTTGGCCACGCAAAACCTTCATTATGTCAACGTTTTGCCATCTATTGTAAGTTTGCTTGATTGCTTCCCCTTTTTTGTTTGTTTCATTCATGATAAATGAATTTACATTGAAGTTGAATGTAAAATGATTATTGACTTTTGTTCTATAGGGTTTGAATGTTTACAGCATTCTTCTACACGATACTCTTGTGATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATGCACACTCCAATCAACCGCTGAAGCCGCAGTGCATTTCTCCTGAATTATATGTTCAACTTCAGTTTTAGCTCAGATCAGCAATAACCTTTATTGATGTTTCCCCCCTTTTGTTGCAGGAAGGGGTGAAAACCTGTTTGTTGTTTCCGTTAAAATATTGATCACACTGGAGTTTGAAATTTCACTTGTACTGATCAAAGACATCAGATAGTAAGTTTTGAAGCTGTAGTTTGTGGTGTTCGAAAATAACAAAAAGAACCTTTCTTACTGCCAGATTGTCAAGTTCTGCAAATTTTTCTTTTACAAATCAAAATTTTTCTGTTTTGATTCGATGTTTTGGTGGATGATTTCCAACTTTAGAAACCGCCTAAATGAAGCAAAAAGAATTGGATGAATGAGAGATGGAAGGACATTCTTTGCTTTTCCGAGCCTATTTATATATGCAGATCCAGCTATACTGGCGTCTGGGTTGGCCGGCCACTGATTCCCCAACAATATCATTTTTAATCATGCATGTTATAATTATTTCCCAAAGTATTTGCTAAAAGCATTTCTGAATCCATTGATTGTCCCTTTACCCCATTCAGGTCTGGGTCTGAAATGCATTCCATTCTCATTCATCCCATATTTTGGTTCTTATACTCTCTGAATCTTATTGTTTCCACTGATTTCTTTAAGCATATTATTGAGTCTTCCGTATTACGGATTTGGAAACCACAAGACAATGTTTCAGACGGGAGCTGATTCACCATTTTCTGAACTTGAAGGCGAAGCATCATTAATCTTTTGCAACAAGTGAATACTTTGAAAGCTTTGCAACGATTGAGTAATTTAAATTGCATAAATATTATTTTGTAGTTCTTGAGAAGAATTCAGAATGAATGTTTTTGTATATTTTACCACACTGGGTTTGGTTTGCTACATTTTCTTTGTCACTCTCATCTCATATTATACACACTGGATTTATGTATCCTCCTGTTTAGCTGCAAAAGGTGAACACAATGCAGAAATTCGTCACTTCTCGGTGTCTGATGGACTTGTCTCTGTCAAGTACTCCCTCATTATTCTTGTGTTGGATTCGCTAACCATCTGAAAACAATGATTAATCTCAGTAGGGTAGCAAGCAACTGATCATAATGCTGTTAGGAAAATGGCAGAGAAATGTACGAGTTTTTCTTACTTTGAAAGCTAATCGCTTGAGGTTGTCCCACTCAAAATCGTTTTTGCAGTATGCAGATCGAACCTGGAATCAACAATTCGCTTACTTATGAGTGTTTTTCACTGTGGGGATGCATTCATCAACTAAGTGTACAGAACTAACCTCTAGTATACGCAATGCTGCCAAAGCCAAGAGATTTACCACAATTAGAAGCCTCATTGTTAGAACAAGATATGAAACTTGATTAACAATAAACTTCATCTTTCTTCAGACTTGA ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGACTTGA ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGACTTGA MKQAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKT
BLAST of CsGy6G032830.1 vs. NCBI nr
Match: XP_004134779.1 (PREDICTED: 39S ribosomal protein L4, mitochondrial [Cucumis sativus] >KGN49080.1 hypothetical protein Csa_6G513440 [Cucumis sativus]) HSP 1 Score: 333.6 bits (854), Expect = 4.0e-88 Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. NCBI nr
Match: XP_008440040.1 (PREDICTED: 50S ribosomal protein L4 [Cucumis melo]) HSP 1 Score: 327.4 bits (838), Expect = 2.9e-86 Identity = 162/168 (96.43%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. NCBI nr
Match: XP_022132909.1 (uncharacterized protein LOC111005636 isoform X1 [Momordica charantia]) HSP 1 Score: 297.0 bits (759), Expect = 4.2e-77 Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. NCBI nr
Match: XP_022132910.1 (uncharacterized protein LOC111005636 isoform X2 [Momordica charantia]) HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74 Identity = 146/167 (87.43%), Postives = 151/167 (90.42%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. NCBI nr
Match: XP_018844243.1 (PREDICTED: uncharacterized protein LOC109008557 [Juglans regia] >XP_018844244.1 PREDICTED: uncharacterized protein LOC109008557 [Juglans regia]) HSP 1 Score: 286.2 bits (731), Expect = 7.4e-74 Identity = 142/169 (84.02%), Postives = 149/169 (88.17%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TAIR10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family) HSP 1 Score: 260.0 bits (663), Expect = 1.0e-69 Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TAIR10
Match: AT1G07320.1 (ribosomal protein L4) HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15 Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. Swiss-Prot
Match: sp|Q2RQW1|RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) OX=269796 GN=rplD PE=3 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33 Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. Swiss-Prot
Match: sp|B6IRQ7|RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplD PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33 Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. Swiss-Prot
Match: sp|B9KJ69|RL4_ANAMF (50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida) OX=320483 GN=rplD PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32 Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. Swiss-Prot
Match: sp|Q5PA59|RL4_ANAMM (50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries) OX=234826 GN=rplD PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32 Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. Swiss-Prot
Match: sp|Q2W2J2|RL4_MAGSA (50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rplD PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 8.1e-32 Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TrEMBL
Match: tr|A0A0A0KH99|A0A0A0KH99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513440 PE=3 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 2.7e-88 Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TrEMBL
Match: tr|A0A1S3B0T2|A0A1S3B0T2_CUCME (50S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103484636 PE=3 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86 Identity = 162/168 (96.43%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TrEMBL
Match: tr|A0A2I4GK19|A0A2I4GK19_9ROSI (uncharacterized protein LOC109008557 OS=Juglans regia OX=51240 GN=LOC109008557 PE=3 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 4.9e-74 Identity = 142/169 (84.02%), Postives = 149/169 (88.17%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TrEMBL
Match: tr|A0A061GHC5|A0A061GHC5_THECC (Ribosomal protein L4/L1 family isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030301 PE=3 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 3.2e-73 Identity = 141/165 (85.45%), Postives = 151/165 (91.52%), Query Frame = 0
BLAST of CsGy6G032830.1 vs. TrEMBL
Match: tr|A0A2P5F0H1|A0A2P5F0H1_9ROSA (50S ribosomal protein uL OS=Trema orientalis OX=63057 GN=TorRG33x02_128590 PE=3 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 5.4e-73 Identity = 142/165 (86.06%), Postives = 149/165 (90.30%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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