CsGy6G032830 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G032830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L4
Location	Chr6 : 29856857 .. 29860024 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGTAGCAACATTTTTCCTGCAACCTTCGTATGATTGTATGCAACTATTATGGTGGGAACAATTGATATATCACTTTTGTGGTTAATAAATTATGTTGCATCATTAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGTATTTGTTGTTACCTCATATTGCGCAAGAGCCTGAGAATAGAGACTGATTGGAAAGAGATAGTGTTCATTGAGGGATTTATTTTTCTTTATGAGTATCTACTTTGTTCCTTTCTACTTATTTGAATAATATATTTCCTTAATTATTTGCACCAGAGGATAATATTACAAGGCATAGTGACATACCCACTTTTGATTTTGCATTTTAATTTTGTATTTAAATGAAACCAATATACTTGTGCTACGAAGGAGGCAAATTCATCAGCAATTTCATTAACATATGTCCATGCATTGGAAATAGCAATTTTTTTGAAACAGAAAAAGATTTGTATATTGATTGTTATGGTCAGTTTACGTGTATCTTGAATCTCAAGGGAGTTCTGTCTAATAATTTTGCTATTTTTAATGTTTATAAGGTAATTGATCTATTATATTCGGTGTCAATATATTTTACTAGCTAGTTATCCTGCAAGATGCAAGTTTTGGGTAAGTTCTTAGAAGTGATTATTAAGTACTAAGCATCTCGAGTGATGACAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGGTAGCTAAGATTTTCTTTGAATAATGTTCAAAAGATTATTGCCAAAGATATTATACAATAGTTGCTAACATGCTGGATGATGATTACAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGGTATGTGTTTCTTTCTTTCTACCATTTTAGCAGGATGGATTATTTTATAAAATGGTTTGGCTCGCGTGCACATCCTAACAGATATTTTCTTTCCAGTTGCTTCTGAAACCTCATTTTGGGAAGTTTTTAACTTGCAGCTTCTGGTATTTGATAATTTGGACGTCACTACGCATAAGACGAAGAATATGGTGAAATATGTCAGTAAAATGGAGAATACCAAAAAAGTATTACTAGTTGATGGTGGTCCCATAGATGAGAAGCTGAAGTTGGCCACGCAAAACCTTCATTATGTCAACGTTTTGCCATCTATTGTAAGTTTGCTTGATTGCTTCCCCTTTTTTGTTTGTTTCATTCATGATAAATGAATTTACATTGAAGTTGAATGTAAAATGATTATTGACTTTTGTTCTATAGGGTTTGAATGTTTACAGCATTCTTCTACACGATACTCTTGTGATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATGCACACTCCAATCAACCGCTGAAGCCGCAGTGCATTTCTCCTGAATTATATGTTCAACTTCAGTTTTAGCTCAGATCAGCAATAACCTTTATTGATGTTTCCCCCCTTTTGTTGCAGGAAGGGGTGAAAACCTGTTTGTTGTTTCCGTTAAAATATTGATCACACTGGAGTTTGAAATTTCACTTGTACTGATCAAAGACATCAGATAGTAAGTTTTGAAGCTGTAGTTTGTGGTGTTCGAAAATAACAAAAAGAACCTTTCTTACTGCCAGATTGTCAAGTTCTGCAAATTTTTCTTTTACAAATCAAAATTTTTCTGTTTTGATTCGATGTTTTGGTGGATGATTTCCAACTTTAGAAACCGCCTAAATGAAGCAAAAAGAATTGGATGAATGAGAGATGGAAGGACATTCTTTGCTTTTCCGAGCCTATTTATATATGCAGATCCAGCTATACTGGCGTCTGGGTTGGCCGGCCACTGATTCCCCAACAATATCATTTTTAATCATGCATGTTATAATTATTTCCCAAAGTATTTGCTAAAAGCATTTCTGAATCCATTGATTGTCCCTTTACCCCATTCAGGTCTGGGTCTGAAATGCATTCCATTCTCATTCATCCCATATTTTGGTTCTTATACTCTCTGAATCTTATTGTTTCCACTGATTTCTTTAAGCATATTATTGAGTCTTCCGTATTACGGATTTGGAAACCACAAGACAATGTTTCAGACGGGAGCTGATTCACCATTTTCTGAACTTGAAGGCGAAGCATCATTAATCTTTTGCAACAAGTGAATACTTTGAAAGCTTTGCAACGATTGAGTAATTTAAATTGCATAAATATTATTTTGTAGTTCTTGAGAAGAATTCAGAATGAATGTTTTTGTATATTTTACCACACTGGGTTTGGTTTGCTACATTTTCTTTGTCACTCTCATCTCATATTATACACACTGGATTTATGTATCCTCCTGTTTAGCTGCAAAAGGTGAACACAATGCAGAAATTCGTCACTTCTCGGTGTCTGATGGACTTGTCTCTGTCAAGTACTCCCTCATTATTCTTGTGTTGGATTCGCTAACCATCTGAAAACAATGATTAATCTCAGTAGGGTAGCAAGCAACTGATCATAATGCTGTTAGGAAAATGGCAGAGAAATGTACGAGTTTTTCTTACTTTGAAAGCTAATCGCTTGAGGTTGTCCCACTCAAAATCGTTTTTGCAGTATGCAGATCGAACCTGGAATCAACAATTCGCTTACTTATGAGTGTTTTTCACTGTGGGGATGCATTCATCAACTAAGTGTACAGAACTAACCTCTAGTATACGCAATGCTGCCAAAGCCAAGAGATTTACCACAATTAGAAGCCTCATTGTTAGAACAAGATATGAAACTTGATTAACAATAAACTTCATCTTTCTTCAGACTTGA

mRNA sequence

ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGACTTGA

Coding sequence (CDS)

ATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGACTTGA

Protein sequence

MKQAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKT

Homology

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BLAST of CsGy6G032830 vs. NCBI nr
Match: XP_004134779.1 (PREDICTED: 39S ribosomal protein L4, mitochondrial [Cucumis sativus] >KGN49080.1 hypothetical protein Csa_6G513440 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 4.0e-88
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 3   QAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 62
           +AGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK
Sbjct: 57  KAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 116

Query: 63  GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 122
           GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR
Sbjct: 117 GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 176

Query: 123 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK
Sbjct: 177 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 224

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BLAST of CsGy6G032830 vs. NCBI nr
Match: XP_008440040.1 (PREDICTED: 50S ribosomal protein L4 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 2.9e-86
Identity = 162/168 (96.43%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 3   QAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 62
           +AG+FLASRGFC+SILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNF+NEDK
Sbjct: 73  KAGAFLASRGFCSSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFQNEDK 132

Query: 63  GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 122
           GFM+LAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR
Sbjct: 133 GFMLLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 192

Query: 123 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK
Sbjct: 193 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 240

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BLAST of CsGy6G032830 vs. NCBI nr
Match: XP_022132909.1 (uncharacterized protein LOC111005636 isoform X1 [Momordica charantia])

HSP 1 Score: 297.0 bits (759), Expect = 4.2e-77
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 3   QAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 62
           +AG F AS+G  TSILTPESS  AFPS+LLSA PV  EERKIGL QDLMIPVTNF+NEDK
Sbjct: 57  KAGCFFASQGLSTSILTPESSKAAFPSDLLSATPVELEERKIGLLQDLMIPVTNFQNEDK 116

Query: 63  GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 122
           GFMVLAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRAR
Sbjct: 117 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRAR 176

Query: 123 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           HGTLRGPQFRGGA MHGPKPRSHAFKLNKKVRRLGL IALSAR AEGK
Sbjct: 177 HGTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGK 224

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BLAST of CsGy6G032830 vs. NCBI nr
Match: XP_022132910.1 (uncharacterized protein LOC111005636 isoform X2 [Momordica charantia])

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 146/167 (87.43%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 4   AGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKG 63
           AG     +G  TSILTPESS  AFPS+LLSA PV  EERKIGL QDLMIPVTNF+NEDKG
Sbjct: 50  AGYSTLLKGLSTSILTPESSKAAFPSDLLSATPVELEERKIGLLQDLMIPVTNFQNEDKG 109

Query: 64  FMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARH 123
           FMVLAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRARH
Sbjct: 110 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARH 169

Query: 124 GTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           GTLRGPQFRGGA MHGPKPRSHAFKLNKKVRRLGL IALSAR AEGK
Sbjct: 170 GTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGK 216

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BLAST of CsGy6G032830 vs. NCBI nr
Match: XP_018844243.1 (PREDICTED: uncharacterized protein LOC109008557 [Juglans regia] >XP_018844244.1 PREDICTED: uncharacterized protein LOC109008557 [Juglans regia])

HSP 1 Score: 286.2 bits (731), Expect = 7.4e-74
Identity = 142/169 (84.02%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 2   KQAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENED 61
           K     LA+R   TSILTPES   AFPS LLS KPV + ER IGLYQDL+IPVTNF NED
Sbjct: 58  KVGSHILANRWLSTSILTPESGEGAFPSHLLSTKPVVTAERSIGLYQDLVIPVTNFHNED 117

Query: 62  KGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRA 121
           KGFMVLAGDVFD+PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRA
Sbjct: 118 KGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRA 177

Query: 122 RHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           RHGTLRGPQFRGGA MHGPKPRSHAFKLNKKVRRLGL IAL+AR AEGK
Sbjct: 178 RHGTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGK 226

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BLAST of CsGy6G032830 vs. TAIR10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-69
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MKQAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENE 60
           +K   + L++R   TSILTP+ S   FPS+LL+ K V + +R IG YQDL+IPVTNF+NE
Sbjct: 43  LKYGMALLSNRKLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNE 102

Query: 61  DKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGR 120
           +KGFMVLAGDVFD+PIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTGRKPW QKGTGR
Sbjct: 103 EKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGR 162

Query: 121 ARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           ARHGTLRGPQFRGG  MHGPKPRSHA K+NK+VRRLGL IAL+AR AEGK
Sbjct: 163 ARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGK 209

[Close]

BLAST of CsGy6G032830 vs. TAIR10
Match: AT1G07320.1 (ribosomal protein L4)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 22  SSNNAFPSELLSAKPVAS--EERKIGLYQDL-MIPVTNFENEDKGFMVLAGDVFDLPIRK 81
           SS++  P   +S   + S    + + +   L  +P+ +FE E  G   L          +
Sbjct: 21  SSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTAR 80

Query: 82  DIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTLRGPQFRGGATMH 141
            ++HR +   L  +++GT ST T  EV G G KP+ QK TG AR G+ R P   GG  + 
Sbjct: 81  AVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVF 140

Query: 142 GPKPRSHAFKLNKKVRRLGLMIAL-SARVAEG 170
           GP+P+  + K+N+K ++L +  AL SA  AEG
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEG 172

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BLAST of CsGy6G032830 vs. Swiss-Prot
Match: sp|Q2RQW1|RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) OX=269796 GN=rplD PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33
Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 54  VTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW 113
           V   + +D G + L+  VF LP+R D++HR+VRWQLA+RQ GTH TK ISE+SGT  KP+
Sbjct: 5   VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64

Query: 114 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           KQKGTG AR G+ R PQFRGGAT+ GP  RSHA  LNKKVR+LGL  ALSA+   G+
Sbjct: 65  KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQ 121

[Close]

BLAST of CsGy6G032830 vs. Swiss-Prot
Match: sp|B6IRQ7|RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplD PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 54  VTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW 113
           V N  NE  G + LA +VF LP R+DI+ R+V WQLAKR+QGTH TK ISE++GT +KPW
Sbjct: 5   VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64

Query: 114 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           +QKGTGRAR G+ R PQFRGGA + GP  RSH   L KKVR+L L  ALS + AEGK
Sbjct: 65  RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGK 121

[Close]

BLAST of CsGy6G032830 vs. Swiss-Prot
Match: sp|B9KJ69|RL4_ANAMF (50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida) OX=320483 GN=rplD PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 52  IPVTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 111
           + V N +NE  G + L+ +VF + +R+D++  VV WQLAKR+ GTH T+ IS+VSGT  K
Sbjct: 3   VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62

Query: 112 PWKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           P++QK TGRAR G+LR PQFRGGA + GP  RSHA+ LNKKVRRLGL +ALS +V++ K
Sbjct: 63  PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSK 121

[Close]

BLAST of CsGy6G032830 vs. Swiss-Prot
Match: sp|Q5PA59|RL4_ANAMM (50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries) OX=234826 GN=rplD PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 52  IPVTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 111
           + V N +NE  G + L+ +VF + +R+D++  VV WQLAKR+ GTH T+ IS+VSGT  K
Sbjct: 3   VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62

Query: 112 PWKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           P++QK TGRAR G+LR PQFRGGA + GP  RSHA+ LNKKVRRLGL +ALS +V++ K
Sbjct: 63  PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSK 121

[Close]

BLAST of CsGy6G032830 vs. Swiss-Prot
Match: sp|Q2W2J2|RL4_MAGSA (50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rplD PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.1e-32
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 54  VTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW 113
           V + +N+  G + LA ++F +P+R DI+ R V WQLAKRQ G H TKTISE+SGT +KP+
Sbjct: 5   VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64

Query: 114 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
            QKG GRAR G+LR  QFRGG+T+ GP  RSHA  L KKVR+L L  ALSA+VA+GK
Sbjct: 65  AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGK 121

[Close]

BLAST of CsGy6G032830 vs. TrEMBL
Match: tr|A0A0A0KH99|A0A0A0KH99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513440 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.7e-88
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 3   QAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 62
           +AGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK
Sbjct: 57  KAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 116

Query: 63  GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 122
           GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR
Sbjct: 117 GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 176

Query: 123 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK
Sbjct: 177 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 224

[Close]

BLAST of CsGy6G032830 vs. TrEMBL
Match: tr|A0A1S3B0T2|A0A1S3B0T2_CUCME (50S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103484636 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 162/168 (96.43%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 3   QAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDK 62
           +AG+FLASRGFC+SILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNF+NEDK
Sbjct: 73  KAGAFLASRGFCSSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFQNEDK 132

Query: 63  GFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 122
           GFM+LAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR
Sbjct: 133 GFMLLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRAR 192

Query: 123 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK
Sbjct: 193 HGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 240

[Close]

BLAST of CsGy6G032830 vs. TrEMBL
Match: tr|A0A2I4GK19|A0A2I4GK19_9ROSI (uncharacterized protein LOC109008557 OS=Juglans regia OX=51240 GN=LOC109008557 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.9e-74
Identity = 142/169 (84.02%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 2   KQAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENED 61
           K     LA+R   TSILTPES   AFPS LLS KPV + ER IGLYQDL+IPVTNF NED
Sbjct: 58  KVGSHILANRWLSTSILTPESGEGAFPSHLLSTKPVVTAERSIGLYQDLVIPVTNFHNED 117

Query: 62  KGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRA 121
           KGFMVLAGDVFD+PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRA
Sbjct: 118 KGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRA 177

Query: 122 RHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           RHGTLRGPQFRGGA MHGPKPRSHAFKLNKKVRRLGL IAL+AR AEGK
Sbjct: 178 RHGTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGK 226

[Close]

BLAST of CsGy6G032830 vs. TrEMBL
Match: tr|A0A061GHC5|A0A061GHC5_THECC (Ribosomal protein L4/L1 family isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030301 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.2e-73
Identity = 141/165 (85.45%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 6   SFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFM 65
           SFLA R F T+ILTP+S+ +AFPS+LLSAK V + +R IGLYQDL+IPVTNF NEDKG M
Sbjct: 60  SFLACRKFATTILTPDSAESAFPSDLLSAKTVLTPDRTIGLYQDLVIPVTNFHNEDKGLM 119

Query: 66  VLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGT 125
           VLAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRARHGT
Sbjct: 120 VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGT 179

Query: 126 LRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           LRGPQFRGGATMHGPKPRSHA KLNKKVRRLGL IALSA  AEGK
Sbjct: 180 LRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSASAAEGK 224

[Close]

BLAST of CsGy6G032830 vs. TrEMBL
Match: tr|A0A2P5F0H1|A0A2P5F0H1_9ROSA (50S ribosomal protein uL OS=Trema orientalis OX=63057 GN=TorRG33x02_128590 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 5.4e-73
Identity = 142/165 (86.06%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 6   SFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFM 65
           SFL+ R F TSILTPESS  AFPS+LLSAKPV + ER IGL QDL+IPVTNF NEDKG M
Sbjct: 61  SFLSQRKFSTSILTPESSEGAFPSDLLSAKPVLASERDIGLCQDLVIPVTNFHNEDKGLM 120

Query: 66  VLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGT 125
           VLAGDVFD+PIRKDIIHRVV WQLAKRQQGTHSTKTISEVSGTGRKPW+QKGTGRARHGT
Sbjct: 121 VLAGDVFDVPIRKDIIHRVVLWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGT 180

Query: 126 LRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGK 171
           LRGPQFRGGA MHGPKPRSHA KLNKKVRRLGL IAL+AR AEGK
Sbjct: 181 LRGPQFRGGARMHGPKPRSHAIKLNKKVRRLGLKIALTARAAEGK 225

The following BLAST results are available for this feature:

BLAST of CsGy6G032830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134779.1	4.0e-88	99.40	PREDICTED: 39S ribosomal protein L4, mitochondrial [Cucumis sativus] >KGN49080.1...	[more]
XP_008440040.1	2.9e-86	96.43	PREDICTED: 50S ribosomal protein L4 [Cucumis melo]	[more]
XP_022132909.1	4.2e-77	88.69	uncharacterized protein LOC111005636 isoform X1 [Momordica charantia]	[more]
XP_022132910.1	1.1e-74	87.43	uncharacterized protein LOC111005636 isoform X2 [Momordica charantia]	[more]
XP_018844243.1	7.4e-74	84.02	PREDICTED: uncharacterized protein LOC109008557 [Juglans regia] >XP_018844244.1 ...	[more]

BLAST of CsGy6G032830 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20060.1	1.0e-69	75.88	Ribosomal protein L4/L1 family	[more]
AT1G07320.1	7.2e-15	33.55	ribosomal protein L4	[more]

BLAST of CsGy6G032830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2RQW1\|RL4_RHORT	1.1e-33	60.68	50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1...	[more]
sp\|B6IRQ7\|RL4_RHOCS	1.5e-33	61.54	50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=...	[more]
sp\|B9KJ69\|RL4_ANAMF	2.8e-32	57.14	50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida) OX=320483 GN=rp...	[more]
sp\|Q5PA59\|RL4_ANAMM	2.8e-32	57.14	50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries) OX=234826 GN...	[more]
sp\|Q2W2J2\|RL4_MAGSA	8.1e-32	58.97	50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700...	[more]

BLAST of CsGy6G032830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KH99\|A0A0A0KH99_CUCSA	2.7e-88	99.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513440 PE=3 SV=1	[more]
tr\|A0A1S3B0T2\|A0A1S3B0T2_CUCME	1.9e-86	96.43	50S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103484636 PE=3 SV=1	[more]
tr\|A0A2I4GK19\|A0A2I4GK19_9ROSI	4.9e-74	84.02	uncharacterized protein LOC109008557 OS=Juglans regia OX=51240 GN=LOC109008557 P...	[more]
tr\|A0A061GHC5\|A0A061GHC5_THECC	3.2e-73	85.45	Ribosomal protein L4/L1 family isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_03030...	[more]
tr\|A0A2P5F0H1\|A0A2P5F0H1_9ROSA	5.4e-73	86.06	50S ribosomal protein uL OS=Trema orientalis OX=63057 GN=TorRG33x02_128590 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR002136	Ribosomal_L4/L1e
IPR023574	Ribosomal_L4_dom_sf
IPR013005	Ribosomal_uL4/L1e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G032830.1	CsGy6G032830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013005	50S ribosomal protein uL4	TIGRFAM	TIGR03953	TIGR03953	coord: 67..170 e-value: 2.3E-45 score: 152.2
IPR013005	50S ribosomal protein uL4	PANTHER	PTHR10746	50S RIBOSOMAL PROTEIN L4	coord: 15..170
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	G3DSA:3.40.1370.10		coord: 44..171 e-value: 2.8E-54 score: 186.1
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	SSF52166	Ribosomal protein L4	coord: 52..170
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 67..170 e-value: 1.1E-44 score: 152.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..144
None	No IPR available	PANTHER	PTHR10746:SF11	50S RIBOSOMAL PROTEIN L4	coord: 15..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G032830	Cla014425	Watermelon (97103) v1	cgybwmB468
CsGy6G032830	Csa6G513440	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G032830	MELO3C007416	Melon (DHL92) v3.5.1	cgybmeB445
CsGy6G032830	ClCG01G021700	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G032830	CSPI06G33280	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G032830	CmaCh03G005520	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G032830	CmoCh03G005790	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G032830	Lsi01G004550	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G032830	Cp4.1LG10g09870	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G032830	MELO3C007416.2	Melon (DHL92) v3.6.1	cgybmedB442
CsGy6G032830	CsaV3_6G048740	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G032830	Cla97C01G021300	Watermelon (97103) v2	cgybwmbB394
CsGy6G032830	Bhi03G000470	Wax gourd	cgybwgoB598
CsGy6G032830	Carg13677	Silver-seed gourd	carcgybB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G032830	Cucumber (Chinese Long) v3	cgybcucB305
CsGy6G032830	Cucumber (Gy14) v2	cgybcgybB153
CsGy6G032830	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G032830	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G032830	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G032830	Cucumber (Chinese Long) v2	cgybcuB289
CsGy6G032830	Bottle gourd (USVL1VR-Ls)	cgyblsiB391
CsGy6G032830	Melon (DHL92) v3.5.1	cgybmeB404
CsGy6G032830	Melon (DHL92) v3.6.1	cgybmedB403
CsGy6G032830	Wild cucumber (PI 183967)	cgybcpiB295
CsGy6G032830	Silver-seed gourd	carcgybB0640