CsGy6G029050.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy6G029050.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr6 : 27806622 .. 27808656 (-)
Sequence length1068
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTGTGCAACAAATCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGTATAAGTAAGGTCAAAGAACTCAAGCCCACCATTAAACTTTGTCCGGTAACCACCACCATTGGCCATCTCTCCTGGTTAGTGTAGCAAGCTTTATAGAGAGAAAATTTAGAACACCATGCAGAAAGGGAGTTGAGAGACTTCCGGTTCGTTTTTTTTCCCCTTCTTTTGGGGGTCTCCCAATTTTTTGGCTTTAGGAAGCCGAAGAGGAGTTAAATGGAAACAATCAGCGTAGAAGTGGAGCAAAATCCTAAGCTATCCAATTCCATTCTTTGAAGAATCCGTACTAGATCGTATGGATCACAAAGAACTAGAAAACTTTCTTGTTTTCTTCGTCCAATTTTGGCTTATGCCTAGCGTTTGTGTTTTTAGCATACCAGCCCCCTGCTGTTTTTCATTCGAGTCCTTGTTAGGATTAACATCCCGACGACAGTTGGATTTGGAGTTTTGCCATTTCAACGTTTTGCTTCTGTCATCAGTGTCGTAAGAACCTGGATATTTATTTGATCCCCAGTCTCATCCATTGTTGGATTGCGAATTTTTATATTTTCGAGCAGAGTTTTGTTGGAGATAGGAATCATAATCATCGATGATTGCCTTCTTGACTTGTGTTTAGATGTTGATTTGTATTGGATCTAAATTATTCTCCACGCTGTAATAAGGCCAACATGGCAACACCAAGATGATATATTACAAATGTTACCATTATTTACTTCCTATTTTTGATAAGTTATCATAATTTTCTTGATTTGACAAAAACAATAGTTCAGAAGTAAATCAAAATAAAGAATGTAAACTTTCGTATGATTCTTGAAAACCTCCAACATTATTATATAAAATTGTCACATCTAGTCCTACATACACTAAATTTATGCCTTACATAATGATGAATTTTGAAACAAAACAGAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGAGAAATAAGATAGAGAGAAAATATTAGGTTGTTATAAACATTAGGTTGGGGTTTAGATGATTGAAATTACCAAGCCTCCAGGCATCCGGGCCCCTGGGGAGGAGCGGCTGCATACTGTGGTGGCGCCACCACTGGAGGCGGCGGCGGCCCCTGATAGTAACCTTCACCGTAGTAAGGATAAGCATACTTGCCTTGGCTCATCTTTCACTTCATGCAGATCAAAACCCAGAGCAGATTTTATGTGATATTAGCATTTGGATTTGTGTTCGTTTGAATTAGAAAGAGAGTTTTTATGGTTGTTTGTTGTTGCCAACGTGGCTTTGCAGATTGAAGTGTTGATGACAAGTAGCCATTTTTGCCGAATCCAAAATCAACGTGTGAGTTATCCATAGCCGAGCGGTGATAAGCAAAGTTTAAATGTTTGTTTCGAGTTTTAACCCAACAATGGAACTGCCGACCTGGAGACCGCATGTTTGAAATCAAAATTTTTGATTAATAAATACTCGATTTTAATTTTGTGTGATAAATTTTTGTTCATCAAACATTTTATGTCTTATTAAACACAAAATTTGATTTTATGTTTAATAAATTTAACTAAAACAAGATTGAATTTTTTTTCAATTAGGGTTATAGTTTATGGTTTTTATTTATTTATTTCATTTGTTAATAATCTTTC

mRNA sequence

ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGAGAAATAAGATAGAGAGAAAATATTAGGTTGTTATAAACATTAGGTTGGGGTTTAGATGATTGAAATTACCAAGCCTCCAGGCATCCGGGCCCCTGGGGAGGAGCGGCTGCATACTGTGGTGGCGCCACCACTGGAGGCGGCGGCGGCCCCTGATAGTAACCTTCACCGTAGTAAGGATAAGCATACTTGCCTTGGCTCATCTTTCACTTCATGCAGATCAAAACCCAGAGCAGATTTTATGTGATATTAGCATTTGGATTTGTGTTCGTTTGAATTAGAAAGAGAGTTTTTATGGTTGTTTGTTGTTGCCAACGTGGCTTTGCAGATTGAAGTGTTGATGACAAGTAGCCATTTTTGCCGAATCCAAAATCAACGTGTGAGTTATCCATAGCCGAGCGGTGATAAGCAAAGTTTAAATGTTTGTTTCGAGTTTTAACCCAACAATGGAACTGCCGACCTGGAGACCGCATGTTTGAAATCAAAATTTTTGATTAATAAATACTCGATTTTAATTTTGTGTGATAAATTTTTGTTCATCAAACATTTTATGTCTTATTAAACACAAAATTTGATTTTATGTTTAATAAATTTAACTAAAACAAGATTGAATTTTTTTTCAATTAGGGTTATAGTTTATGGTTTTTATTTATTTATTTCATTTGTTAATAATCTTTC

Coding sequence (CDS)

ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGA

Protein sequence

MFSTRCFFSFFGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEILVRLARWQTDTMDHSTSSIGQQDSSSTEQQD
Homology
[Close]
BLAST of CsGy6G029050.1 vs. TrEMBL
Match: tr|A0A0D9XDI0|A0A0D9XDI0_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 54  MPSKETLPFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           MPS+   P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 1   MPSE---PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 43

[Close]
BLAST of CsGy6G029050.1 vs. TrEMBL
Match: tr|A0A0D9XDH8|A0A0D9XDH8_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050.1 vs. TrEMBL
Match: tr|A0A0D9XDH9|A0A0D9XDH9_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050.1 vs. TrEMBL
Match: tr|A0A0D9XDI1|A0A0D9XDI1_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050.1 vs. TrEMBL
Match: tr|A0A1R1Y0P9|A0A1R1Y0P9_9FUNG (Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g4155 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-04
Identity = 36/91 (39.56%), Postives = 40/91 (43.96%), Query Frame = 0 

Query: 16  SRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSR 75
           SR  A    VS TV +G  LSSC  Y    L   G +S P   T P  LP  I PA    
Sbjct: 111 SRSIAIYRIVSETVKYGLRLSSCSTYDSTFLNFRGSLSSPLNSTSPIILPFVIRPAITFN 170

Query: 76  KVDFPAPLGPNTAVILPFGAYPEILVRLARW 107
           KV FP P  P TA   P     E L+ +  W
Sbjct: 171 KVVFPDPDDPITATNSPLFISKETLLNIVFW 201

The following BLAST results are available for this feature:
BLAST of CsGy6G029050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0D9XDI0|A0A0D9XDI0_9ORYZ1.8e-0463.04Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDH8|A0A0D9XDH8_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDH9|A0A0D9XDH9_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDI1|A0A0D9XDI1_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A1R1Y0P9|A0A1R1Y0P9_9FUNG9.0e-0439.56Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g4155 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G029050CsGy6G029050gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G029050.1.CDS.2CsGy6G029050.1.CDS.2CDS
CsGy6G029050.1.CDS.1CsGy6G029050.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G029050.1.exon.2CsGy6G029050.1.exon.2exon
CsGy6G029050.1.exon.1CsGy6G029050.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G029050.1.three_prime_UTR.1CsGy6G029050.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G029050.1CsGy6G029050.1-proteinpolypeptide