CsGy6G029050 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G029050
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr6 : 27806622 .. 27808656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTGTGCAACAAATCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGTATAAGTAAGGTCAAAGAACTCAAGCCCACCATTAAACTTTGTCCGGTAACCACCACCATTGGCCATCTCTCCTGGTTAGTGTAGCAAGCTTTATAGAGAGAAAATTTAGAACACCATGCAGAAAGGGAGTTGAGAGACTTCCGGTTCGTTTTTTTTCCCCTTCTTTTGGGGGTCTCCCAATTTTTTGGCTTTAGGAAGCCGAAGAGGAGTTAAATGGAAACAATCAGCGTAGAAGTGGAGCAAAATCCTAAGCTATCCAATTCCATTCTTTGAAGAATCCGTACTAGATCGTATGGATCACAAAGAACTAGAAAACTTTCTTGTTTTCTTCGTCCAATTTTGGCTTATGCCTAGCGTTTGTGTTTTTAGCATACCAGCCCCCTGCTGTTTTTCATTCGAGTCCTTGTTAGGATTAACATCCCGACGACAGTTGGATTTGGAGTTTTGCCATTTCAACGTTTTGCTTCTGTCATCAGTGTCGTAAGAACCTGGATATTTATTTGATCCCCAGTCTCATCCATTGTTGGATTGCGAATTTTTATATTTTCGAGCAGAGTTTTGTTGGAGATAGGAATCATAATCATCGATGATTGCCTTCTTGACTTGTGTTTAGATGTTGATTTGTATTGGATCTAAATTATTCTCCACGCTGTAATAAGGCCAACATGGCAACACCAAGATGATATATTACAAATGTTACCATTATTTACTTCCTATTTTTGATAAGTTATCATAATTTTCTTGATTTGACAAAAACAATAGTTCAGAAGTAAATCAAAATAAAGAATGTAAACTTTCGTATGATTCTTGAAAACCTCCAACATTATTATATAAAATTGTCACATCTAGTCCTACATACACTAAATTTATGCCTTACATAATGATGAATTTTGAAACAAAACAGAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGAGAAATAAGATAGAGAGAAAATATTAGGTTGTTATAAACATTAGGTTGGGGTTTAGATGATTGAAATTACCAAGCCTCCAGGCATCCGGGCCCCTGGGGAGGAGCGGCTGCATACTGTGGTGGCGCCACCACTGGAGGCGGCGGCGGCCCCTGATAGTAACCTTCACCGTAGTAAGGATAAGCATACTTGCCTTGGCTCATCTTTCACTTCATGCAGATCAAAACCCAGAGCAGATTTTATGTGATATTAGCATTTGGATTTGTGTTCGTTTGAATTAGAAAGAGAGTTTTTATGGTTGTTTGTTGTTGCCAACGTGGCTTTGCAGATTGAAGTGTTGATGACAAGTAGCCATTTTTGCCGAATCCAAAATCAACGTGTGAGTTATCCATAGCCGAGCGGTGATAAGCAAAGTTTAAATGTTTGTTTCGAGTTTTAACCCAACAATGGAACTGCCGACCTGGAGACCGCATGTTTGAAATCAAAATTTTTGATTAATAAATACTCGATTTTAATTTTGTGTGATAAATTTTTGTTCATCAAACATTTTATGTCTTATTAAACACAAAATTTGATTTTATGTTTAATAAATTTAACTAAAACAAGATTGAATTTTTTTTCAATTAGGGTTATAGTTTATGGTTTTTATTTATTTATTTCATTTGTTAATAATCTTTC

mRNA sequence

ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGAGAAATAAGATAGAGAGAAAATATTAGGTTGTTATAAACATTAGGTTGGGGTTTAGATGATTGAAATTACCAAGCCTCCAGGCATCCGGGCCCCTGGGGAGGAGCGGCTGCATACTGTGGTGGCGCCACCACTGGAGGCGGCGGCGGCCCCTGATAGTAACCTTCACCGTAGTAAGGATAAGCATACTTGCCTTGGCTCATCTTTCACTTCATGCAGATCAAAACCCAGAGCAGATTTTATGTGATATTAGCATTTGGATTTGTGTTCGTTTGAATTAGAAAGAGAGTTTTTATGGTTGTTTGTTGTTGCCAACGTGGCTTTGCAGATTGAAGTGTTGATGACAAGTAGCCATTTTTGCCGAATCCAAAATCAACGTGTGAGTTATCCATAGCCGAGCGGTGATAAGCAAAGTTTAAATGTTTGTTTCGAGTTTTAACCCAACAATGGAACTGCCGACCTGGAGACCGCATGTTTGAAATCAAAATTTTTGATTAATAAATACTCGATTTTAATTTTGTGTGATAAATTTTTGTTCATCAAACATTTTATGTCTTATTAAACACAAAATTTGATTTTATGTTTAATAAATTTAACTAAAACAAGATTGAATTTTTTTTCAATTAGGGTTATAGTTTATGGTTTTTATTTATTTATTTCATTTGTTAATAATCTTTC

Coding sequence (CDS)

ATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTTAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGA

Protein sequence

MFSTRCFFSFFGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEILVRLARWQTDTMDHSTSSIGQQDSSSTEQQD
Homology
[Close]
BLAST of CsGy6G029050 vs. TrEMBL
Match: tr|A0A0D9XDI0|A0A0D9XDI0_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 54  MPSKETLPFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           MPS+   P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 1   MPSE---PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 43

[Close]
BLAST of CsGy6G029050 vs. TrEMBL
Match: tr|A0A0D9XDH8|A0A0D9XDH8_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050 vs. TrEMBL
Match: tr|A0A0D9XDH9|A0A0D9XDH9_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050 vs. TrEMBL
Match: tr|A0A0D9XDI1|A0A0D9XDI1_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 61  PFRLPLAILPARPSRKVDFPAPLGPNTAVILPFGAYPEI 100
           P RLPLA+ PAR SRKVD PAPLGP  AV  P  A+PE+
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEM 46

[Close]
BLAST of CsGy6G029050 vs. TrEMBL
Match: tr|A0A1R1Y0P9|A0A1R1Y0P9_9FUNG (Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g4155 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-04
Identity = 36/91 (39.56%), Postives = 40/91 (43.96%), Query Frame = 0 

Query: 16  SRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSR 75
           SR  A    VS TV +G  LSSC  Y    L   G +S P   T P  LP  I PA    
Sbjct: 111 SRSIAIYRIVSETVKYGLRLSSCSTYDSTFLNFRGSLSSPLNSTSPIILPFVIRPAITFN 170

Query: 76  KVDFPAPLGPNTAVILPFGAYPEILVRLARW 107
           KV FP P  P TA   P     E L+ +  W
Sbjct: 171 KVVFPDPDDPITATNSPLFISKETLLNIVFW 201

The following BLAST results are available for this feature:
BLAST of CsGy6G029050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G029050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0D9XDI0|A0A0D9XDI0_9ORYZ1.8e-0463.04Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDH8|A0A0D9XDH8_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDH9|A0A0D9XDH9_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A0D9XDI1|A0A0D9XDI1_9ORYZ4.1e-0466.67Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A1R1Y0P9|A0A1R1Y0P9_9FUNG9.0e-0439.56Uncharacterized protein OS=Smittium culicis OX=133412 GN=AYI70_g4155 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G029050.1CsGy6G029050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G029050Wild cucumber (PI 183967)cgybcpiB258
CsGy6G029050Wild cucumber (PI 183967)cgybcpiB273
CsGy6G029050Wild cucumber (PI 183967)cgybcpiB287
CsGy6G029050Silver-seed gourdcarcgybB0003
CsGy6G029050Silver-seed gourdcarcgybB0063
CsGy6G029050Silver-seed gourdcarcgybB0418
CsGy6G029050Cucumber (Chinese Long) v3cgybcucB263
CsGy6G029050Cucumber (Chinese Long) v3cgybcucB278
CsGy6G029050Cucumber (Chinese Long) v3cgybcucB298
CsGy6G029050Watermelon (97103) v2cgybwmbB404
CsGy6G029050Watermelon (97103) v2cgybwmbB394
CsGy6G029050Watermelon (97103) v2cgybwmbB478
CsGy6G029050Wax gourdcgybwgoB602
CsGy6G029050Wax gourdcgybwgoB615
CsGy6G029050Cucumber (Gy14) v2cgybcgybB065
CsGy6G029050Cucumber (Gy14) v2cgybcgybB110
CsGy6G029050Cucurbita maxima (Rimu)cgybcmaB706
CsGy6G029050Cucurbita maxima (Rimu)cgybcmaB716
CsGy6G029050Cucurbita maxima (Rimu)cgybcmaB831
CsGy6G029050Cucurbita maxima (Rimu)cgybcmaB849
CsGy6G029050Cucurbita maxima (Rimu)cgybcmaB861
CsGy6G029050Cucurbita moschata (Rifu)cgybcmoB685
CsGy6G029050Cucurbita moschata (Rifu)cgybcmoB700
CsGy6G029050Cucurbita moschata (Rifu)cgybcmoB811
CsGy6G029050Cucurbita moschata (Rifu)cgybcmoB829
CsGy6G029050Cucurbita moschata (Rifu)cgybcmoB843
CsGy6G029050Cucurbita pepo (Zucchini)cgybcpeB710
CsGy6G029050Cucurbita pepo (Zucchini)cgybcpeB718
CsGy6G029050Cucurbita pepo (Zucchini)cgybcpeB810
CsGy6G029050Cucurbita pepo (Zucchini)cgybcpeB871
CsGy6G029050Cucurbita pepo (Zucchini)cgybcpeB877
CsGy6G029050Cucumber (Chinese Long) v2cgybcuB250
CsGy6G029050Cucumber (Chinese Long) v2cgybcuB265
CsGy6G029050Cucumber (Chinese Long) v2cgybcuB281
CsGy6G029050Bottle gourd (USVL1VR-Ls)cgyblsiB423
CsGy6G029050Bottle gourd (USVL1VR-Ls)cgyblsiB398
CsGy6G029050Bottle gourd (USVL1VR-Ls)cgyblsiB434
CsGy6G029050Bottle gourd (USVL1VR-Ls)cgyblsiB449
CsGy6G029050Melon (DHL92) v3.5.1cgybmeB413
CsGy6G029050Melon (DHL92) v3.5.1cgybmeB423
CsGy6G029050Melon (DHL92) v3.5.1cgybmeB444
CsGy6G029050Melon (DHL92) v3.6.1cgybmedB411
CsGy6G029050Melon (DHL92) v3.6.1cgybmedB419
CsGy6G029050Melon (DHL92) v3.6.1cgybmedB440
CsGy6G029050Watermelon (Charleston Gray)cgybwcgB398
CsGy6G029050Watermelon (Charleston Gray)cgybwcgB399
CsGy6G029050Watermelon (Charleston Gray)cgybwcgB470
CsGy6G029050Watermelon (97103) v1cgybwmB443
CsGy6G029050Watermelon (97103) v1cgybwmB468
CsGy6G029050Watermelon (97103) v1cgybwmB499