CsGy6G017960.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTATTTGTCTACATCAACCCCTTCATAACTTAGTTTATTCATTTAATTTCTCACATTTTCTAAATTCTTTCCAAAAAAAAAAAAAAAAATCATTCCCTCTCTTATATCTTAGACCCTTCTCAAATTATTATTACACTCATTATTGTTATTATTGTTATTATTATTTCTCCTTGTAGCTCTAATAACAAATGTTTGGAATTGAAGAAGTTATTGGAGAACTAAATAGAGAAGATGATCATGAAGAAAAAAGTGGAAGTGGTAAAGAGTTCATCATCAAGAAGCACCATAGATTATTGCCACCAGGTTATAGGTTTCACCCTACTGATGAAGAACTCATTGCCTTTTATCTTGCTTCAAAAGTCTTCAAACCTTCAAACTTTGATCTCGGTGTCAACATTGCGGAAGTCGACCTCAATAGATGTGAGCCGTGGGAACTTCCAGGTAACTTAATGTACGTGTGTGTGTGTATTACGTACTAGCTAATTCAAAAGCTTAAGGTAATGATGAGTTGTTTTTGTGTTTTTTTTAGAAGAGGCAAAGATGGGTGAAAAAGAGTGGTATTTTTTCAGCTTAAGAGTGAGGAAATACCCAACAGGATTAAGAACAAATAGAGCAACAGTGGCTGGTTATTGGAAAGCAACAGGAAAAGATAGGCAAATTCATAGTAGTTGTAATGGAGTTAAGCTTGGAACTAAGAAAACACTTGTGTTTTATAAAGGAGGTGCTCCTAGAGGCATTAAAACCAAGTGGGTTATGCATGAATATCGCCTTCATTCTGATCTTGCTTCTCCTAATGTCTGCAAGGTGGGGTTCATTTTCTCATATCCATATATCTTCACGTTTCGTGACTGAATTTTATGCTGTTCCTTTACATTAATTACTTTAGCTTCCCTTTTTGTTAATCTTTTAGTTAGACTGTTTCAAATGAATAATTTCGATGTTTTAAAATGATGGGTTTTTAAAATTTAGTAACTTCTTAAACAAATGATAAAATTTTAGTGAAAAAGACAATGAGAAATGGCCAAATTTCATATATTTTAAGCCTTTCGTATCTACTTTTTAAAGTTTCTTTAGTTTATAAAGCTTTAATTGACTCTTTCCAAAAATCAAGTCAAGTTCGAAATTTCTTATAAAGAAAATAAGTTTTAAAAATTTGTTTATGTTTTGAAATTTGACGAAGAATGTTGCTCTTTTGCTTAAGCTAGATTGAAGAAAATGGTTGGACGAAATCCCAACCTACCATTTTTTTTCTAAACGAAACTGGAAATCAAATTGTTACTGCAATGTTAGCAAATTTTGTAACATGAAGAGATCAAAGGGGTATCTTTCTTTTCTTTTGTATTTTAATTATATTCTTTCAAATGATCTTTTGTAGCAGGACGAGTGGGTTCTATGTAGAATAATTCACAAATCCGGAGAGAAGATAAAACCTAAATCGTCCTTCCAAGAAACAGTTCCCTCTCCCATCTCTCTACCATCATTGTTACTCAACGCAACTCAATCCATAAACCATATCAACATCCAATCCCAACCACCTCTACACAACATTCAGCACCATGAAAATGGCCTGGAAAGCTTCATCATCAACAACCCACACTTCATTTTCCAACCCAACCTCTTTCCATTTGGCTTAAATAACCACGACCCACATTTGACGACACCACCGCCGCCGCCACCATCAATTCAAATGACCGACACGAACTATCACCCCCATTTTAACCCATCCTTGTTGCTCGACGGCGGCTGCGACAGCCAGCAGGCCTCCAGTTTTGGTGTTGACAGTGGCGGCACGTTGGTCGACGTCGCTGCTTATAGAGGTGCTCGGGGTGATCAATCCGATGAAAATTGGTCCGGAGGGTGCTGATGATTGGGTGTCAGTCTGTCAGATGTTTTGTGTTAAGATTATTATTATAATTATTATTATTATTCTCTACTACACAGATCCCGAAGCATTATTCTTCTTACTATTTTGCTTCTGTTTGATGATGCTCCAAGATCGATGTTATAGTACAATAATATTAATATCTCTACTTCGGACTTGCTTTATTTATGACATTTTCGTAGAATTGTTTGCATATATCCATGTTCAACTTTTCTTTTAAATGATCATTGTATTTTATTTATTTTTGAAAAATATAAGACACTACTTCAGTTCTTTGGGTTTGAGTTAGATTATAATCTAGGGCTCTTACTTTTCAAATTAAATAACTTTAGCTCTAAGTTTTGTTTTTGGAAACACCCAAGTGTTTATTCCTCACATTTTCTGTTAGTTATTATCAGAAAGTTTACTAGACATTCATTAGTGTAACAATTTTTTTTTTCTCACTCTTCTCTTCTTTTCATTCTTTTAATCTCCAATACTTATTGAGTCTTAGGTAAGAAAAGTTTTTTTAATTATTGTTTTTTAAATGAAAAGTTGATCATACTTGTCAATTTTCATTAGGTACAACAGATGTTGTACAAGAGACTAGTGTAATCAACTTGCACCTAATTATTTTCTTTCTTTCTCCTTGTACTCCAAATCTTTTTCGTCTCATGATTGTCCAGCCACCTATCGGTGTTGGGAAAAAGGAAAGAAAGAAAAAAAGAAAAACAATCCAATGTCAAGCCGTGTGTACAACTACAACGCAACGATGGGCGGTGGCGAGGTCGGAGATGACAACAGCGACAACGGTTGAGAAACATGGAGCCCAAAACAGATCAAGGTCCATCATGTCAGTAATATATATAAAATAACTGCATGTGGACTAGGTTGTAGCATTGTAGGTGAGAAGAAAAAATATATCTTTGTGGGAAAAAGAAGAAGCAGTGGGCAGTAACAATTTCACTCTCTCTCCCATTGTGGCTATTTTTGCTGAAGAAGACGATGAAAACCTCATTGTTTCTCTTGGTGTTTTCACTGCTTGTATTTTCCTTTCTTTCTATTAGAGAGAGTTTGAATGTTATTGTAAAATTAAGTGATCCATGAGCATTTTTCCATTTAAAGAAAATTGATAGAAATTATTCTTCGACCATTGTAAACTCTTGACAGTTTCTTCTTCAAATCATTTTACCGGAACCTGTATCGGTAGCAGAGAATTGGATATAGCTCACACATTTGGA AGTATTTGTCTACATCAACCCCTTCATAACTTAGTTTATTCATTTAATTTCTCACATTTTCTAAATTCTTTCCAAAAAAAAAAAAAAAAATCATTCCCTCTCTTATATCTTAGACCCTTCTCAAATTATTATTACACTCATTATTGTTATTATTGTTATTATTATTTCTCCTTGTAGCTCTAATAACAAATGTTTGGAATTGAAGAAGTTATTGGAGAACTAAATAGAGAAGATGATCATGAAGAAAAAAGTGGAAGTGGTAAAGAGTTCATCATCAAGAAGCACCATAGATTATTGCCACCAGGTTATAGGTTTCACCCTACTGATGAAGAACTCATTGCCTTTTATCTTGCTTCAAAAGTCTTCAAACCTTCAAACTTTGATCTCGGTGTCAACATTGCGGAAGTCGACCTCAATAGATGTGAGCCGTGGGAACTTCCAGAAGAGGCAAAGATGGGTGAAAAAGAGTGGTATTTTTTCAGCTTAAGAGTGAGGAAATACCCAACAGGATTAAGAACAAATAGAGCAACAGTGGCTGGTTATTGGAAAGCAACAGGAAAAGATAGGCAAATTCATAGTAGTTGTAATGGAGTTAAGCTTGGAACTAAGAAAACACTTGTGTTTTATAAAGGAGGTGCTCCTAGAGGCATTAAAACCAAGTGGGTTATGCATGAATATCGCCTTCATTCTGATCTTGCTTCTCCTAATGTCTGCAAGCAGGACGAGTGGGTTCTATGTAGAATAATTCACAAATCCGGAGAGAAGATAAAACCTAAATCGTCCTTCCAAGAAACAGTTCCCTCTCCCATCTCTCTACCATCATTGTTACTCAACGCAACTCAATCCATAAACCATATCAACATCCAATCCCAACCACCTCTACACAACATTCAGCACCATGAAAATGGCCTGGAAAGCTTCATCATCAACAACCCACACTTCATTTTCCAACCCAACCTCTTTCCATTTGGCTTAAATAACCACGACCCACATTTGACGACACCACCGCCGCCGCCACCATCAATTCAAATGACCGACACGAACTATCACCCCCATTTTAACCCATCCTTGTTGCTCGACGGCGGCTGCGACAGCCAGCAGGCCTCCAGTTTTGGTGTTGACAGTGGCGGCACGTTGGTCGACGTCGCTGCTTATAGAGGTGCTCGGGGTGATCAATCCGATGAAAATTGGTCCGGAGGGTGCTGATGATTGGGTGTCAGTCTGTCAGATGTTTTGTGTTAAGATTATTATTATAATTATTATTATTATTCTCTACTACACAGATCCCGAAGCATTATTCTTCTTACTATTTTGCTTCTGTTTGATGATGCTCCAAGATCGATGTTATAGTACAATAATATTAATATCTCTACTTCGGACTTGCTTTATTTATGACATTTTCGTAGAATTGTTTGCATATATCCATGTTCAACTTTTCTTTTAAATGATCATTGTATTTTATTTATTTTTGAAAAATATAAGACACTACTTCAGTTCTTTGGGTTTGAGTTAGATTATAATCTAGGGCTCTTACTTTTCAAATTAAATAACTTTAGCTCTAAGTTTTGTTTTTGGAAACACCCAAGTGTTTATTCCTCACATTTTCTGTTAGTTATTATCAGAAAGTTTACTAGACATTCATTAGTGTAACAATTTTTTTTTTCTCACTCTTCTCTTCTTTTCATTCTTTTAATCTCCAATACTTATTGAGTCTTAGGTAAGAAAAGTTTTTTTAATTATTGTTTTTTAAATGAAAAGTTGATCATACTTGTCAATTTTCATTAGGTACAACAGATGTTGTACAAGAGACTAGTGTAATCAACTTGCACCTAATTATTTTCTTTCTTTCTCCTTGTACTCCAAATCTTTTTCGTCTCATGATTGTCCAGCCACCTATCGGTGTTGGGAAAAAGGAAAGAAAGAAAAAAAGAAAAACAATCCAATGTCAAGCCGTGTGTACAACTACAACGCAACGATGGGCGGTGGCGAGGTCGGAGATGACAACAGCGACAACGGTTGAGAAACATGGAGCCCAAAACAGATCAAGGTCCATCATGTCAGTAATATATATAAAATAACTGCATGTGGACTAGGTTGTAGCATTGTAGGTGAGAAGAAAAAATATATCTTTGTGGGAAAAAGAAGAAGCAGTGGGCAGTAACAATTTCACTCTCTCTCCCATTGTGGCTATTTTTGCTGAAGAAGACGATGAAAACCTCATTGTTTCTCTTGGTGTTTTCACTGCTTGTATTTTCCTTTCTTTCTATTAGAGAGAGTTTGAATGTTATTGTAAAATTAAGTGATCCATGAGCATTTTTCCATTTAAAGAAAATTGATAGAAATTATTCTTCGACCATTGTAAACTCTTGACAGTTTCTTCTTCAAATCATTTTACCGGAACCTGTATCGGTAGCAGAGAATTGGATATAGCTCACACATTTGGA ATGTTTGGAATTGAAGAAGTTATTGGAGAACTAAATAGAGAAGATGATCATGAAGAAAAAAGTGGAAGTGGTAAAGAGTTCATCATCAAGAAGCACCATAGATTATTGCCACCAGGTTATAGGTTTCACCCTACTGATGAAGAACTCATTGCCTTTTATCTTGCTTCAAAAGTCTTCAAACCTTCAAACTTTGATCTCGGTGTCAACATTGCGGAAGTCGACCTCAATAGATGTGAGCCGTGGGAACTTCCAGAAGAGGCAAAGATGGGTGAAAAAGAGTGGTATTTTTTCAGCTTAAGAGTGAGGAAATACCCAACAGGATTAAGAACAAATAGAGCAACAGTGGCTGGTTATTGGAAAGCAACAGGAAAAGATAGGCAAATTCATAGTAGTTGTAATGGAGTTAAGCTTGGAACTAAGAAAACACTTGTGTTTTATAAAGGAGGTGCTCCTAGAGGCATTAAAACCAAGTGGGTTATGCATGAATATCGCCTTCATTCTGATCTTGCTTCTCCTAATGTCTGCAAGCAGGACGAGTGGGTTCTATGTAGAATAATTCACAAATCCGGAGAGAAGATAAAACCTAAATCGTCCTTCCAAGAAACAGTTCCCTCTCCCATCTCTCTACCATCATTGTTACTCAACGCAACTCAATCCATAAACCATATCAACATCCAATCCCAACCACCTCTACACAACATTCAGCACCATGAAAATGGCCTGGAAAGCTTCATCATCAACAACCCACACTTCATTTTCCAACCCAACCTCTTTCCATTTGGCTTAAATAACCACGACCCACATTTGACGACACCACCGCCGCCGCCACCATCAATTCAAATGACCGACACGAACTATCACCCCCATTTTAACCCATCCTTGTTGCTCGACGGCGGCTGCGACAGCCAGCAGGCCTCCAGTTTTGGTGTTGACAGTGGCGGCACGTTGGTCGACGTCGCTGCTTATAGAGGTGCTCGGGGTGATCAATCCGATGAAAATTGGTCCGGAGGGTGCTGA MFGIEEVIGELNREDDHEEKSGSGKEFIIKKHHRLLPPGYRFHPTDEELIAFYLASKVFKPSNFDLGVNIAEVDLNRCEPWELPEEAKMGEKEWYFFSLRVRKYPTGLRTNRATVAGYWKATGKDRQIHSSCNGVKLGTKKTLVFYKGGAPRGIKTKWVMHEYRLHSDLASPNVCKQDEWVLCRIIHKSGEKIKPKSSFQETVPSPISLPSLLLNATQSINHINIQSQPPLHNIQHHENGLESFIINNPHFIFQPNLFPFGLNNHDPHLTTPPPPPPSIQMTDTNYHPHFNPSLLLDGGCDSQQASSFGVDSGGTLVDVAAYRGARGDQSDENWSGGC
BLAST of CsGy6G017960.1 vs. NCBI nr
Match: XP_011657330.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X1 [Cucumis sativus]) HSP 1 Score: 694.5 bits (1791), Expect = 1.8e-196 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. NCBI nr
Match: XP_011657331.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X3 [Cucumis sativus]) HSP 1 Score: 688.3 bits (1775), Expect = 1.3e-194 Identity = 337/338 (99.70%), Postives = 337/338 (99.70%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. NCBI nr
Match: XP_004144293.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X2 [Cucumis sativus] >KGN47519.1 hypothetical protein Csa_6G355380 [Cucumis sativus]) HSP 1 Score: 688.0 bits (1774), Expect = 1.7e-194 Identity = 337/338 (99.70%), Postives = 337/338 (99.70%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. NCBI nr
Match: XP_008464816.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X1 [Cucumis melo]) HSP 1 Score: 660.2 bits (1702), Expect = 3.7e-186 Identity = 324/339 (95.58%), Postives = 328/339 (96.76%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. NCBI nr
Match: XP_008464818.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X3 [Cucumis melo]) HSP 1 Score: 654.1 bits (1686), Expect = 2.7e-184 Identity = 323/339 (95.28%), Postives = 327/339 (96.46%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TAIR10
Match: AT1G76420.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 247.3 bits (630), Expect = 1.4e-65 Identity = 117/192 (60.94%), Postives = 144/192 (75.00%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TAIR10
Match: AT2G24430.1 (NAC domain containing protein 38) HSP 1 Score: 221.5 bits (563), Expect = 8.0e-58 Identity = 105/160 (65.62%), Postives = 123/160 (76.88%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TAIR10
Match: AT3G15170.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 216.9 bits (551), Expect = 2.0e-56 Identity = 105/158 (66.46%), Postives = 121/158 (76.58%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TAIR10
Match: AT5G39610.1 (NAC domain containing protein 6) HSP 1 Score: 210.3 bits (534), Expect = 1.8e-54 Identity = 116/240 (48.33%), Postives = 147/240 (61.25%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TAIR10
Match: AT3G18400.1 (NAC domain containing protein 58) HSP 1 Score: 208.8 bits (530), Expect = 5.4e-54 Identity = 111/211 (52.61%), Postives = 140/211 (66.35%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. Swiss-Prot
Match: sp|Q9S851|NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana OX=3702 GN=NAC031 PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 2.5e-64 Identity = 117/192 (60.94%), Postives = 144/192 (75.00%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. Swiss-Prot
Match: sp|Q9FRV4|NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana OX=3702 GN=NAC054 PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 3.6e-55 Identity = 105/158 (66.46%), Postives = 121/158 (76.58%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. Swiss-Prot
Match: sp|Q9FKA0|NAC92_ARATH (NAC domain-containing protein 92 OS=Arabidopsis thaliana OX=3702 GN=NAC92 PE=1 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 3.3e-53 Identity = 116/240 (48.33%), Postives = 147/240 (61.25%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. Swiss-Prot
Match: sp|O04017|NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.2e-52 Identity = 100/156 (64.10%), Postives = 114/156 (73.08%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. Swiss-Prot
Match: sp|Q9FLR3|NAC79_ARATH (NAC domain-containing protein 79 OS=Arabidopsis thaliana OX=3702 GN=NAC079 PE=2 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 3.7e-52 Identity = 109/195 (55.90%), Postives = 132/195 (67.69%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TrEMBL
Match: tr|A0A0A0KFF1|A0A0A0KFF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G355380 PE=4 SV=1) HSP 1 Score: 688.0 bits (1774), Expect = 1.1e-194 Identity = 337/338 (99.70%), Postives = 337/338 (99.70%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TrEMBL
Match: tr|A0A1S3CMC2|A0A1S3CMC2_CUCME (protein CUP-SHAPED COTYLEDON 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502608 PE=4 SV=1) HSP 1 Score: 660.2 bits (1702), Expect = 2.5e-186 Identity = 324/339 (95.58%), Postives = 328/339 (96.76%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TrEMBL
Match: tr|A0A1S3CMV9|A0A1S3CMV9_CUCME (protein CUP-SHAPED COTYLEDON 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502608 PE=4 SV=1) HSP 1 Score: 654.1 bits (1686), Expect = 1.8e-184 Identity = 323/339 (95.28%), Postives = 327/339 (96.46%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TrEMBL
Match: tr|A0A1S3CMG2|A0A1S3CMG2_CUCME (protein CUP-SHAPED COTYLEDON 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502608 PE=4 SV=1) HSP 1 Score: 653.7 bits (1685), Expect = 2.3e-184 Identity = 323/339 (95.28%), Postives = 327/339 (96.46%), Query Frame = 0
BLAST of CsGy6G017960.1 vs. TrEMBL
Match: tr|A0A1Q3BD03|A0A1Q3BD03_CEPFO (NAM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09352 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70 Identity = 156/278 (56.12%), Postives = 185/278 (66.55%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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