CsGy6G015190.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G015190.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	probable WRKY transcription factor 25
Location	Chr6 : 13781815 .. 13782999 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTTTTTTCTCTGCTACATTAGACGATCGTAGTGGCAACGGCCGCCGGACACAGCCGGACCTTGCGGTGGTGGCCATGGGTAATCCGCCGTTGTCTCCACCACTTTTCTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCGTGTAAGTTTTTCCCTTCCTTTTCGTTTTTATTCTCAAATTGGAGATTTCAAATATTTTTTTGCATCCATCTTCAAACTTTTAACCTATATCAGTTCAACTCTGTGTTCATGTCACAGAGTCTATATATATATATGCTAATAAATTAATTTGATGCAACCAAAATCTGTGTCTATGCTTTGAATATGTGCATACGTTGGATACATTAACTAAGCTATTAGGTAAACACAATTTGTAGTATGCTTTATTTGAAGTACTCTTGATTTTCTATCTTTTGAAATTGTTTGGAATATGAATTTTAAAAAATATAACTGTATCATCATCTATTAATTGGAAAGAAGGTATTATTACTTTCACGTTAAGTTATGTTTAGGATAGCAAAGCTTTGTATTTGGTAAACACATATGCATGGAGCTTGAACCTTCAAATACAAAATGGTTAGATAATTAGAGAAAGAAAATTGTAATTAAACTTTTTATTCTTTGTTTTAAAACACTATTATTCATCTTTCTCAAATTCTTTTTATTCTTTTTGACAATATTGAGAAGAAAGGAGATGGAAGTTCTAAATTTGATGTGGATGATATAATATTGATTCGTGTTAAATCATAATATATTACAACTATTTAAAGGGTAAAAAAGAAAAAATAGGGTAGACTTGGTCCAATTAATTATTGAACAAGAAAAATTGACTTTTATTTTAATTTTCTTTTCATCCCCATCTTCATCTTTTGTTTCATTATTGGCATTATAACATCATTTGATATATATATATATATAAAGTAAATGTGTTGAGATATATTATTTGCAGATTCTGCTATCGCCGTCCACCGGAGATTTGAGAAAATCAGCAAGTAACTGTTCCGGCCACCACCAACAGAATGTCAAACAAGAACACAACAACATTACTAAATTCTCATTTCCTCCTAATCACACCACAAAATCATCATCATCATCATCAATCTTTCAATCCTCTTCAACAGTACGTTAA

mRNA sequence

ATGGAATTTTTTTTCTCTGCTACATTAGACGATCGTAGTGGCAACGGCCGCCGGACACAGCCGGACCTTGCGGTGGTGGCCATGGGTAATCCGCCGTTGTCTCCACCACTTTTCTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCGTATTCTGCTATCGCCGTCCACCGGAGATTTGAGAAAATCAGCAAGTAACTGTTCCGGCCACCACCAACAGAATGTCAAACAAGAACACAACAACATTACTAAATTCTCATTTCCTCCTAATCACACCACAAAATCATCATCATCATCATCAATCTTTCAATCCTCTTCAACAGTACGTTAA

Coding sequence (CDS)

ATGGAATTTTTTTTCTCTGCTACATTAGACGATCGTAGTGGCAACGGCCGCCGGACACAGCCGGACCTTGCGGTGGTGGCCATGGGTAATCCGCCGTTGTCTCCACCACTTTTCTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCGTATTCTGCTATCGCCGTCCACCGGAGATTTGAGAAAATCAGCAAGTAACTGTTCCGGCCACCACCAACAGAATGTCAAACAAGAACACAACAACATTACTAAATTCTCATTTCCTCCTAATCACACCACAAAATCATCATCATCATCATCAATCTTTCAATCCTCTTCAACAGTACGTTAA

Protein sequence

MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFPPNHTTKSSSSSSIFQSSSTVR

Homology

[Close]

BLAST of CsGy6G015190.1 vs. NCBI nr
Match: KGN47228.1 (hypothetical protein Csa_6G216960 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL 60
           MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL
Sbjct: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL 60

Query: 61  LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
           LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP
Sbjct: 61  LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 104

[Close]

BLAST of CsGy6G015190.1 vs. NCBI nr
Match: NP_001274406.1 (probable WRKY transcription factor 33-like [Cucumis sativus] >ADU52522.1 WRKY protein [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 28  MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH 87
           MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH
Sbjct: 1   MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH 60

Query: 88  QQNVKQEHNNITKFSFP 105
           QQNVKQEHNNITKFSFP
Sbjct: 61  QQNVKQEHNNITKFSFP 77

[Close]

BLAST of CsGy6G015190.1 vs. NCBI nr
Match: XP_008463823.1 (PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 26, partial [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   FFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLN 63
           FFSATL D SG GRR QPDLAVV  GNPPLSPPL+SPSSFFTIPPGISPTQLLDS     
Sbjct: 20  FFSATLGDPSGGGRRRQPDLAVVGKGNPPLSPPLYSPSSFFTIPPGISPTQLLDSXXXXX 79

Query: 64  SSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
                    T DLRKS +N SGHHQQN+KQEH NIT+FSFP
Sbjct: 80  XXXXXXXXXTRDLRKSXTNNSGHHQQNIKQEH-NITEFSFP 119

[Close]

BLAST of CsGy6G015190.1 vs. NCBI nr
Match: XP_023007167.1 (WRKY transcription factor WRKY24-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMG---------NPPL----SPPLFSPSSFFTIP 60
           MEFFFS+ +++   +GR   P+     +          NPPL    S PLFSPSSFFTIP
Sbjct: 3   MEFFFSSRVEEDPNDGRPRLPESTAPPISSKFSSTPTPNPPLLSAMSQPLFSPSSFFTIP 62

Query: 61  PGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
           PGISPTQLLDSP+LL SS    SP+TG +       +GHHQ+N+KQE +N+ +FSFP
Sbjct: 63  PGISPTQLLDSPVLLTSSNFQASPTTGAI------STGHHQKNMKQEQHNLAEFSFP 113

[Close]

BLAST of CsGy6G015190.1 vs. NCBI nr
Match: XP_023007168.1 (WRKY transcription factor WRKY24-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMG---------NPPL----SPPLFSPSSFFTIP 60
           MEFFFS+ +++   +GR   P+     +          NPPL    S PLFSPSSFFTIP
Sbjct: 3   MEFFFSSRVEEDPNDGRPRLPESTAPPISSKFSSTPTPNPPLLSAMSQPLFSPSSFFTIP 62

Query: 61  PGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
           PGISPTQLLDSP+LL SS    SP+TG +       +GHHQ+N+KQE +N+ +FSFP
Sbjct: 63  PGISPTQLLDSPVLLTSSNFQASPTTGAI------STGHHQKNMKQEQHNLAEFSFP 113

[Close]

BLAST of CsGy6G015190.1 vs. TAIR10
Match: AT5G07100.1 (WRKY DNA-binding protein 26)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 34 SPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASN 83
          SP   SPS +FT+PPG++P   LDSPLL  SS IL SP+TG     + N
Sbjct: 19 SPLPLSPSPYFTMPPGLTPADFLDSPLLFTSSNILPSPTTGTFPAQSLN 67

[Close]

BLAST of CsGy6G015190.1 vs. Swiss-Prot
Match: sp|Q9C5T3|WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=WRKY26 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 34 SPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASN 83
          SP   SPS +FT+PPG++P   LDSPLL  SS IL SP+TG     + N
Sbjct: 19 SPLPLSPSPYFTMPPGLTPADFLDSPLLFTSSNILPSPTTGTFPAQSLN 67

[Close]

BLAST of CsGy6G015190.1 vs. Swiss-Prot
Match: sp|Q6B6R4|WRK24_ORYSI (WRKY transcription factor WRKY24 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 32  PLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTG-------DLRKSASNCS 91
           PLSPP  SPSSFF  P G++    L SP+LL SS I  SP+TG       D R   +   
Sbjct: 54  PLSPPPVSPSSFFNSPIGMNQADFLGSPVLLTSS-IFPSPTTGAFASQHFDWRPEVAAAQ 113

Query: 92  GHHQQNVKQEHNNITKFSF 104
              Q    ++ N+ + FSF
Sbjct: 114 SADQGGKDEQRNSYSDFSF 131

[Close]

BLAST of CsGy6G015190.1 vs. Swiss-Prot
Match: sp|Q6IEQ7|WRK24_ORYSJ (WRKY transcription factor WRKY24 OS=Oryza sativa subsp. japonica OX=39947 GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 32  PLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTG-------DLRKSASNCS 91
           PLSPP  SPSSFF  P G++    L SP+LL SS I  SP+TG       D R   +   
Sbjct: 54  PLSPPPVSPSSFFNSPIGMNQADFLGSPVLLTSS-IFPSPTTGAFASQHFDWRPEVAAAQ 113

Query: 92  GHHQQNVKQEHNNITKFSF 104
              Q    ++ N+ + FSF
Sbjct: 114 SADQGGKDEQRNSYSDFSF 131

[Close]

BLAST of CsGy6G015190.1 vs. TrEMBL
Match: tr|A0A0A0KCF6|A0A0A0KCF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G216960 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.2e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL 60
           MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL
Sbjct: 1   MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPL 60

Query: 61  LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
           LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP
Sbjct: 61  LLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 104

[Close]

BLAST of CsGy6G015190.1 vs. TrEMBL
Match: tr|E7CEX9|E7CEX9_CUCSA (WRKY protein OS=Cucumis sativus OX=3659 GN=WRKY38 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 28  MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH 87
           MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH
Sbjct: 1   MGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHH 60

Query: 88  QQNVKQEHNNITKFSFP 105
           QQNVKQEHNNITKFSFP
Sbjct: 61  QQNVKQEHNNITKFSFP 77

[Close]

BLAST of CsGy6G015190.1 vs. TrEMBL
Match: tr|A0A1S3CK37|A0A1S3CK37_CUCME (LOW QUALITY PROTEIN: probable WRKY transcription factor 26 OS=Cucumis melo OX=3656 GN=LOC103501873 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   FFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLN 63
           FFSATL D SG GRR QPDLAVV  GNPPLSPPL+SPSSFFTIPPGISPTQLLDS     
Sbjct: 20  FFSATLGDPSGGGRRRQPDLAVVGKGNPPLSPPLYSPSSFFTIPPGISPTQLLDSXXXXX 79

Query: 64  SSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFP 105
                    T DLRKS +N SGHHQQN+KQEH NIT+FSFP
Sbjct: 80  XXXXXXXXXTRDLRKSXTNNSGHHQQNIKQEH-NITEFSFP 119

[Close]

BLAST of CsGy6G015190.1 vs. TrEMBL
Match: tr|A0A0U1Z9L5|A0A0U1Z9L5_GOSHI (WRKY protein 9 (Fragment) OS=Gossypium hirsutum OX=3635 GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 6   SATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSS 65
           S  + +R+G+G    P    +   + P+S P  SPSS+F IPPG+SP +LLDSP+LLN+S
Sbjct: 58  SDRIAERTGSG---VPKFKSLPPPSLPISTPPVSPSSYFAIPPGLSPAELLDSPVLLNAS 117

Query: 66  RILLSPSTGDLRKSASN---CSGHHQQNVKQEHNNITKFSF 104
            IL SP+TG     A N    SG++QQNVK+   + T FSF
Sbjct: 118 NILPSPTTGTFPAQAFNWKPSSGNNQQNVKRVDKSYTDFSF 155

[Close]

BLAST of CsGy6G015190.1 vs. TrEMBL
Match: tr|A0A1U8LGD9|A0A1U8LGD9_GOSHI (probable WRKY transcription factor 25 OS=Gossypium hirsutum OX=3635 GN=LOC107927127 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 6   SATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSS 65
           S  + +R+G+G    P    +   + P+S P  SPSS+F IPPG+SP +LLDSP+LLN+S
Sbjct: 59  SDRIAERTGSG---VPKFKSLPPPSLPISTPPVSPSSYFAIPPGLSPAELLDSPVLLNAS 118

Query: 66  RILLSPSTGDLRKSASN---CSGHHQQNVKQEHNNITKFSF 104
            IL SP+TG     A N    SG++QQNVK+   + T FSF
Sbjct: 119 NILPSPTTGTFPAQAFNWKPSSGNNQQNVKRVDKSYTDFSF 156

The following BLAST results are available for this feature:

BLAST of CsGy6G015190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47228.1	6.4e-51	100.00	hypothetical protein Csa_6G216960 [Cucumis sativus]	[more]
NP_001274406.1	1.1e-34	100.00	probable WRKY transcription factor 33-like [Cucumis sativus] >ADU52522.1 WRKY pr...	[more]
XP_008463823.1	1.8e-29	72.28	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 26, partial [...	[more]
XP_023007167.1	3.8e-19	50.43	WRKY transcription factor WRKY24-like isoform X1 [Cucurbita maxima]	[more]
XP_023007168.1	3.8e-19	50.43	WRKY transcription factor WRKY24-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CsGy6G015190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07100.1	6.9e-07	53.06	WRKY DNA-binding protein 26	[more]

BLAST of CsGy6G015190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C5T3\|WRK26_ARATH	1.2e-05	53.06	Probable WRKY transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=WRKY26 ...	[more]
sp\|Q6B6R4\|WRK24_ORYSI	5.2e-04	40.51	WRKY transcription factor WRKY24 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY2...	[more]
sp\|Q6IEQ7\|WRK24_ORYSJ	5.2e-04	40.51	WRKY transcription factor WRKY24 OS=Oryza sativa subsp. japonica OX=39947 GN=WRK...	[more]

BLAST of CsGy6G015190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCF6\|A0A0A0KCF6_CUCSA	4.2e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G216960 PE=4 SV=1	[more]
tr\|E7CEX9\|E7CEX9_CUCSA	7.3e-35	100.00	WRKY protein OS=Cucumis sativus OX=3659 GN=WRKY38 PE=2 SV=1	[more]
tr\|A0A1S3CK37\|A0A1S3CK37_CUCME	1.2e-29	72.28	LOW QUALITY PROTEIN: probable WRKY transcription factor 26 OS=Cucumis melo OX=36...	[more]
tr\|A0A0U1Z9L5\|A0A0U1Z9L5_GOSHI	2.5e-11	46.53	WRKY protein 9 (Fragment) OS=Gossypium hirsutum OX=3635 GN=WRKY9 PE=2 SV=1	[more]
tr\|A0A1U8LGD9\|A0A1U8LGD9_GOSHI	2.5e-11	46.53	probable WRKY transcription factor 25 OS=Gossypium hirsutum OX=3635 GN=LOC107927...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G015190	CsGy6G015190	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G015190.1.CDS.2	CsGy6G015190.1.CDS.2	CDS
CsGy6G015190.1.CDS.1	CsGy6G015190.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G015190.1.exon.2	CsGy6G015190.1.exon.2	exon
CsGy6G015190.1.exon.1	CsGy6G015190.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G015190.1	CsGy6G015190.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..125