CsGy6G014190.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G014190.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr6 : 12535532 .. 12535759 (+)
Sequence length	228

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAAGAGGGATTTTTTTGGGAAGAGCTGCGGCGGAGATTATCTGACGGAGACTTTCCGGCGGAGGAGGAAGGGGTGTGTTGTTTTTGGGATAAGCTTCTTAGTAATGGTAATTTTGCGGAAGTGCTTCTTGTGGAACCGCTTCTTGAAAATATTGATTTGGAGGAGGAGGATGATGAAGATGATTCTTTTTTTGAAACTTTCCATTTTTCTTCCATGTAA

mRNA sequence

ATGGATGAAGAAGAGGGATTTTTTTGGGAAGAGCTGCGGCGGAGATTATCTGACGGAGACTTTCCGGCGGAGGAGGAAGGGGTGTGTTGTTTTTGGGATAAGCTTCTTAGTAATGGTAATTTTGCGGAAGTGCTTCTTGTGGAACCGCTTCTTGAAAATATTGATTTGGAGGAGGAGGATGATGAAGATGATTCTTTTTTTGAAACTTTCCATTTTTCTTCCATGTAA

Coding sequence (CDS)

ATGGATGAAGAAGAGGGATTTTTTTGGGAAGAGCTGCGGCGGAGATTATCTGACGGAGACTTTCCGGCGGAGGAGGAAGGGGTGTGTTGTTTTTGGGATAAGCTTCTTAGTAATGGTAATTTTGCGGAAGTGCTTCTTGTGGAACCGCTTCTTGAAAATATTGATTTGGAGGAGGAGGATGATGAAGATGATTCTTTTTTTGAAACTTTCCATTTTTCTTCCATGTAA

Protein sequence

MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEEDDEDDSFFETFHFSSM

Homology

[Close]

BLAST of CsGy6G014190.1 vs. NCBI nr
Match: KGN47135.1 (hypothetical protein Csa_6G190260 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED 60
          MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED 60

Query: 61 DEDDSFFETFHFSSM 76
          DEDDSFFETFHFSS+
Sbjct: 61 DEDDSFFETFHFSSI 75

[Close]

BLAST of CsGy6G014190.1 vs. TAIR10
Match: AT1G07485.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.7e-05
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 24 EEEGVCCFWDKLLSN-GNFAEVLLVEPLLENIDLEE-EDDEDD----SFFETFHFSSM 76
          E+EG     D+L +N G F E  LVE LLEN+DL+E E+DE D    SFF++ HFSS+
Sbjct: 30 EDEGTEHLVDELRTNAGAFEEEALVEKLLENLDLDEVEEDEHDAANASFFDSLHFSSI 87

[Close]

BLAST of CsGy6G014190.1 vs. TrEMBL
Match: tr|A0A0A0KBR3|A0A0A0KBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED 60
          MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEED 60

Query: 61 DEDDSFFETFHFSSM 76
          DEDDSFFETFHFSS+
Sbjct: 61 DEDDSFFETFHFSSI 75

The following BLAST results are available for this feature:

BLAST of CsGy6G014190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47135.1	1.7e-35	98.67	hypothetical protein Csa_6G190260 [Cucumis sativus]	[more]

BLAST of CsGy6G014190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07485.1	1.7e-05	51.72	unknown protein	[more]

BLAST of CsGy6G014190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G014190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBR3\|A0A0A0KBR3_CUCSA	1.1e-35	98.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G014190	CsGy6G014190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G014190.1.exon.1	CsGy6G014190.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G014190.1.CDS.1	CsGy6G014190.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G014190.1	CsGy6G014190.1-protein	polypeptide