CsGy6G012620.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G012620.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ABSCISIC ACID-INSENSITIVE 5-like protein 1
Location	Chr6 : 10935326 .. 10935894 (+)
Sequence length	540

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTGAACAAGATATTCAAACCCAATTCAGAGCTTGTTTCAAATCTATCGATGACATTTGGTCTGAGATTGATCATAAAGATGATCAACAAAACCCACATCCCCAAGATTATTCCATTGATGTTCACCAAGATTCTTGCCAAAGTCCACATGCTTTTGGGGAAATGAATTCGGAAGCTTCTTCTTCTTCTTCTTCTTCTTGTTCAGTGAAACAACAGCTATGTTCTGGGAATGCCAACAGATCAATGGTGGATTTGAGAGAAATTGTGCTGTCTCTTCGTCTTGTCAAGAGAATAATGATGCTGCAAGTTTCGGAAATATGTCCGGGAATTGCTTTTCAAATTATCAAATGCTCACCCATTCTGCTGGGGAACCTAGTGATAACAATTCAAATGATGAGAAATGTGAAGCGCTTGAAGACTGATTGGGTTGAGCCTAAGAACAAGAAGAGGATCGTTGATATGGTTCTACTGAAGTAGAAGTTGTGTTGCAGCGGAAGACAGCGCAGGATGATAAAAATCGTGAGTTGTCTGCTGCTCTATCTTGGCCACGAAAACATGCCTAA

mRNA sequence

ATGAATGTTGAACAAGATATTCAAACCCAATTCAGAGCTTGTTTCAAATCTATCGATGACATTTGGTCTGAGATTGATCATAAAGATGATCAACAAAACCCACATCCCCAAGATTATTCCATTGATGTTCACCAAGATTCTTGCCAAAGTCCACATGCTTTTGGGGAAATGAATTCGGAAGCTTCTTCTTCTTCTTCTTCTTCTTGTTCAGTGAAACAACAGCTATGTTCTGGGAATGCCAACAGATCAATGGTGGATTTGAGAGAAATTGTGCTGTCTCTTCGTCTTGTCAAGAGAATAATGATGCTGCAAGTTTCGGAAATATGTCCGGGAATTGCTTTTCAAATTATCAAATGCTCACCCATTCTGCTGGGGAACCTAGTGATAACAATTCAAATGATGAGAAATGTGAAGCGCTTGAAGACTGATTGGGTTGAGCCTAAGAACAAGAAGAGGATCGTTGATATGCGGAAGACAGCGCAGGATGATAAAAATCGTGAGTTGTCTGCTGCTCTATCTTGGCCACGAAAACATGCCTAA

Coding sequence (CDS)

ATGAATGTTGAACAAGATATTCAAACCCAATTCAGAGCTTGTTTCAAATCTATCGATGACATTTGGTCTGAGATTGATCATAAAGATGATCAACAAAACCCACATCCCCAAGATTATTCCATTGATGTTCACCAAGATTCTTGCCAAAGTCCACATGCTTTTGGGGAAATGAATTCGGAAGCTTCTTCTTCTTCTTCTTCTTCTTGTTCAGTGAAACAACAGCTATGTTCTGGGAATGCCAACAGATCAATGGTGGATTTGAGAGAAATTGTGCTGTCTCTTCGTCTTGTCAAGAGAATAATGATGCTGCAAGTTTCGGAAATATGTCCGGGAATTGCTTTTCAAATTATCAAATGCTCACCCATTCTGCTGGGGAACCTAGTGATAACAATTCAAATGATGAGAAATGTGAAGCGCTTGAAGACTGATTGGGTTGAGCCTAAGAACAAGAAGAGGATCGTTGATATGCGGAAGACAGCGCAGGATGATAAAAATCGTGAGTTGTCTGCTGCTCTATCTTGGCCACGAAAACATGCCTAA

Protein sequence

MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSEASSSSSSSCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCSPILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDMRKTAQDDKNRELSAALSWPRKHA

Homology

[Close]

BLAST of CsGy6G012620.1 vs. NCBI nr
Match: KGN46954.1 (hypothetical protein Csa_6G152890 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 9.8e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60
           MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE
Sbjct: 1   MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60

Query: 61  ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS 120
           ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS
Sbjct: 61  ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS 120

Query: 121 PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM 157
           PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM
Sbjct: 121 PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM 156

[Close]

BLAST of CsGy6G012620.1 vs. NCBI nr
Match: KGN46952.1 (hypothetical protein Csa_6G152380 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-17
Identity = 85/186 (45.70%), Postives = 100/186 (53.76%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSEA--------- 70
           F  CFKSIDD+WSEI H +DQQNP PQ  SIDVHQ+ CQS HA  EM SE          
Sbjct: 82  FPLCFKSIDDVWSEIGH-NDQQNPLPQ-ASIDVHQNPCQSRHASEEMTSEGLLVKDGVVQ 141

Query: 71  SXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKR---IMMLQVSEICPGIAFQIIK 130
                   S++QQLCS N NRSMVDLREI LSL   +      ++ +SE C    F   +
Sbjct: 142 EASSSSSDSMEQQLCSVNNNRSMVDLREIGLSLSYEQNNDAAGVINMSENC----FSNDQ 201

Query: 131 CSPILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVD-------MRKTAQDDKNRELSAA 178
            S   +G     I      + L T WVEP NKKRI+D        R   +  KNR+ SAA
Sbjct: 202 MSTQSVGEPCDDIS-NEKCEALMTGWVEPNNKKRIIDGSTEVVLQRIQRRMMKNRK-SAA 259

[Close]

BLAST of CsGy6G012620.1 vs. NCBI nr
Match: KGN46955.1 (hypothetical protein Csa_6G152900 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 59/101 (58.42%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1  MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60
          MN+E+DIQTQFRACFKS DDIWSEIDHK DQQNPHPQ    DVHQD CQS HAFGEM  E
Sbjct: 1  MNLEEDIQTQFRACFKSTDDIWSEIDHK-DQQNPHPQ----DVHQDPCQSRHAFGEMTWE 60

Query: 61 AS-XXXXXXCS---------VKQQLCSGNANRSMVDLREIV 92
           S       CS             LCS N N SM   R ++
Sbjct: 61 DSLVKLAGSCSRSFFLLSLNETNSLCSANNNISMRRQRRMI 96

[Close]

BLAST of CsGy6G012620.1 vs. NCBI nr
Match: KGN46953.1 (hypothetical protein Csa_6G152390 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 61
           F  CFKSIDDIWSEIDHK DQQNPHPQ +SIDVHQ+ CQS HA GEM SE
Sbjct: 79  FPLCFKSIDDIWSEIDHK-DQQNPHPQ-HSIDVHQNPCQSRHASGEMTSE 126

[Close]

BLAST of CsGy6G012620.1 vs. NCBI nr
Match: XP_016902297.1 (PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 61
           F  CFKSIDDIWSEIDHK DQQNPHPQ +SIDV Q+ CQS HAFGEM SE
Sbjct: 71  FPLCFKSIDDIWSEIDHK-DQQNPHPQ-HSIDVQQNPCQSRHAFGEMTSE 118

[Close]

BLAST of CsGy6G012620.1 vs. TrEMBL
Match: tr|A0A0A0KDP3|A0A0A0KDP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152890 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.5e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60
           MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE
Sbjct: 1   MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60

Query: 61  ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS 120
           ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS
Sbjct: 61  ASXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKRIMMLQVSEICPGIAFQIIKCS 120

Query: 121 PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM 157
           PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM
Sbjct: 121 PILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVDM 156

[Close]

BLAST of CsGy6G012620.1 vs. TrEMBL
Match: tr|A0A0A0KEX6|A0A0A0KEX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152380 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 85/186 (45.70%), Postives = 100/186 (53.76%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSEA--------- 70
           F  CFKSIDD+WSEI H +DQQNP PQ  SIDVHQ+ CQS HA  EM SE          
Sbjct: 82  FPLCFKSIDDVWSEIGH-NDQQNPLPQ-ASIDVHQNPCQSRHASEEMTSEGLLVKDGVVQ 141

Query: 71  SXXXXXXCSVKQQLCSGNANRSMVDLREIVLSLRLVKR---IMMLQVSEICPGIAFQIIK 130
                   S++QQLCS N NRSMVDLREI LSL   +      ++ +SE C    F   +
Sbjct: 142 EASSSSSDSMEQQLCSVNNNRSMVDLREIGLSLSYEQNNDAAGVINMSENC----FSNDQ 201

Query: 131 CSPILLGNLVITIQMMRNVKRLKTDWVEPKNKKRIVD-------MRKTAQDDKNRELSAA 178
            S   +G     I      + L T WVEP NKKRI+D        R   +  KNR+ SAA
Sbjct: 202 MSTQSVGEPCDDIS-NEKCEALMTGWVEPNNKKRIIDGSTEVVLQRIQRRMMKNRK-SAA 259

[Close]

BLAST of CsGy6G012620.1 vs. TrEMBL
Match: tr|A0A0A0KB58|A0A0A0KB58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152900 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 59/101 (58.42%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1  MNVEQDIQTQFRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 60
          MN+E+DIQTQFRACFKS DDIWSEIDHK DQQNPHPQ    DVHQD CQS HAFGEM  E
Sbjct: 1  MNLEEDIQTQFRACFKSTDDIWSEIDHK-DQQNPHPQ----DVHQDPCQSRHAFGEMTWE 60

Query: 61 AS-XXXXXXCS---------VKQQLCSGNANRSMVDLREIV 92
           S       CS             LCS N N SM   R ++
Sbjct: 61 DSLVKLAGSCSRSFFLLSLNETNSLCSANNNISMRRQRRMI 96

[Close]

BLAST of CsGy6G012620.1 vs. TrEMBL
Match: tr|A0A1S4E244|A0A1S4E244_CUCME (ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991613 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 61
           F  CFKSIDDIWSEIDHK DQQNPHPQ +SIDV Q+ CQS HAFGEM SE
Sbjct: 71  FPLCFKSIDDIWSEIDHK-DQQNPHPQ-HSIDVQQNPCQSRHAFGEMTSE 118

[Close]

BLAST of CsGy6G012620.1 vs. TrEMBL
Match: tr|A0A0A0KBT4|A0A0A0KBT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152390 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 11  FRACFKSIDDIWSEIDHKDDQQNPHPQDYSIDVHQDSCQSPHAFGEMNSE 61
           F  CFKSIDDIWSEIDHK DQQNPHPQ +SIDVHQ+ CQS HA GEM SE
Sbjct: 79  FPLCFKSIDDIWSEIDHK-DQQNPHPQ-HSIDVHQNPCQSRHASGEMTSE 126

The following BLAST results are available for this feature:

BLAST of CsGy6G012620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46954.1	9.8e-77	100.00	hypothetical protein Csa_6G152890 [Cucumis sativus]	[more]
KGN46952.1	2.3e-17	45.70	hypothetical protein Csa_6G152380 [Cucumis sativus]	[more]
KGN46955.1	3.0e-17	58.42	hypothetical protein Csa_6G152900 [Cucumis sativus]	[more]
KGN46953.1	2.4e-11	80.00	hypothetical protein Csa_6G152390 [Cucumis sativus]	[more]
XP_016902297.1	2.4e-11	80.00	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X2 [Cucumis melo]	[more]

BLAST of CsGy6G012620.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G012620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G012620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDP3\|A0A0A0KDP3_CUCSA	6.5e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152890 PE=4 SV=1	[more]
tr\|A0A0A0KEX6\|A0A0A0KEX6_CUCSA	1.5e-17	45.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152380 PE=4 SV=1	[more]
tr\|A0A0A0KB58\|A0A0A0KB58_CUCSA	2.0e-17	58.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152900 PE=4 SV=1	[more]
tr\|A0A1S4E244\|A0A1S4E244_CUCME	1.6e-11	80.00	ABSCISIC ACID-INSENSITIVE 5-like protein 1 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KBT4\|A0A0A0KBT4_CUCSA	1.6e-11	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G012620	CsGy6G012620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G012620.1.exon.1	CsGy6G012620.1.exon.1	exon
CsGy6G012620.1.exon.2	CsGy6G012620.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G012620.1.CDS.1	CsGy6G012620.1.CDS.1	CDS
CsGy6G012620.1.CDS.2	CsGy6G012620.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G012620.1	CsGy6G012620.1-protein	polypeptide