CsGy6G011600.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G011600.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pollen-specific leucine-rich repeat extensin-like protein 1
Location	Chr6 : 10086617 .. 10087819 (-)
Sequence length	618

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTGTAAGTTATTTGGAATGGAATCGCCATGGTACGGAAAATTTCTGCTTAATTAGAAACGGATAGCAGTTCTATTGATTAGACAGCATTATCATTTTATTTTGACTGCGTAGTTTGGTAAACTCGTTTTATCAGAAACGGATGGCAGTCCTATTGTTTAGGAGGAGGTTGTTAGTAGCATTTCGATTTATTAGATGATTTTGTGTAGTAGTGTGATTACTTTTCCATACTATAGTTCTTAGCTTCTTGCTCAATCAGTTAGGCATTGCCGCTTTCTTTGTCATTCTGCTTTGTTTCCAAACATTTCTTTACTATATATAATGTATCTTCTCCCTGCCTCATTTATCTCTTGTTTAATTGCTCAGACATTTGAGGAATTATATGTTTATAATTCTTACTTGAATTGTCTGTGTGGATTCGGATTTCTCAATTTTTAATTGCGTTTTTCATTTTTTTTAATTAAGAATCATTCTTCCATCTATATCAAGGGTTAATATTTTTCCTATTTCACATTGGAGAACCTGTGATTAATAATGCAAACTGCAAACTAACATAACTTTTAGATTTCATTGTTTATATTATCTTAAGAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

mRNA sequence

ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

Coding sequence (CDS)

ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

Protein sequence

MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSPVNSPPLPSPTPLPHAPASSPVESPLHSPPAPPPSDLPHTPSPAPLLPPVSSPSISPAADSDSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFLNMDYAEALHLLAHFALNCHYSLCWTDNFPDWLAGCVGADR

Homology

[Close]

BLAST of CsGy6G011600.1 vs. NCBI nr
Match: XP_011656995.1 (PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KGN46836.1 hypothetical protein Csa_6G140840 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 5.8e-41
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120

Query: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 165

[Close]

BLAST of CsGy6G011600.1 vs. NCBI nr
Match: XP_008463942.2 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 158 NAARSSFL 166
           +AARSSFL
Sbjct: 158 SAARSSFL 165

[Close]

BLAST of CsGy6G011600.1 vs. NCBI nr
Match: XP_022986136.1 (proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 57/68 (83.82%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           D  N  S  GG +SE SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQYG
Sbjct: 96  DFRNSISNNGGVESESSKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYG 155

Query: 158 NAARSSFL 166
           NAARSSFL
Sbjct: 156 NAARSSFL 163

[Close]

BLAST of CsGy6G011600.1 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 100 SNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNA 159
           ++I +GGGGE +E SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQ+GNA
Sbjct: 104 NSIANGGGGE-TEASKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNA 163

Query: 160 ARSSFL 166
           ARSSFL
Sbjct: 164 ARSSFL 168

[Close]

BLAST of CsGy6G011600.1 vs. NCBI nr
Match: XP_022958106.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 114 SKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           SKGGMNGGKKAGIAVGVIAA CFVG+GG VYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 117 SKGGMNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of CsGy6G011600.1 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 100 SNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNA 159
           S+IT   G +    S GGM+GGKK G+A G IAA+C VG+ GFVYKKRQ+NIRRS+YG A
Sbjct: 111 SDITGIEGEKLPSGSGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYA 170

Query: 160 AR 162
           AR
Sbjct: 171 AR 172

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BLAST of CsGy6G011600.1 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 44.7 bits (104), Expect = 8.1e-05
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 104 SGGGGEDSEVSKG---GMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAA 163
           S   GE+    +G   GM+G +KAGIA+G I  +  + IG  VYKKR+DN+ R++Y    
Sbjct: 204 SDAAGEELNDERGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFT 263

Query: 164 RSSFL 166
              FL
Sbjct: 264 EGEFL 268

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BLAST of CsGy6G011600.1 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0


Query: 131 IAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSF 165
           IAA   VG GG+V KKR++NIRRS+YG A+   F
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYASTEFF 139

[Close]

BLAST of CsGy6G011600.1 vs. TrEMBL
Match: tr|A0A0A0KGE9|A0A0A0KGE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.8e-41
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120

Query: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 165

[Close]

BLAST of CsGy6G011600.1 vs. TrEMBL
Match: tr|A0A1S3CKF5|A0A1S3CKF5_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103501947 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 158 NAARSSFL 166
           +AARSSFL
Sbjct: 158 SAARSSFL 165

[Close]

BLAST of CsGy6G011600.1 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-15
Identity = 45/58 (77.59%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 108 GEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GE  E  + GMNGGKKAGIAVGVIAA C VG+GGFVYKKRQDNIRRSQYG AAR   L
Sbjct: 118 GEPEEAEESGMNGGKKAGIAVGVIAAACLVGLGGFVYKKRQDNIRRSQYGYAARREML 175

[Close]

BLAST of CsGy6G011600.1 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           D S+  +   GE  E  + GMNGGKKAGIAVGVIAA   VG+GGF+YKKRQDNIRRSQYG
Sbjct: 109 DISHKDTNDRGEPEEEEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQYG 168

Query: 158 NAARSSFL 166
            AAR   L
Sbjct: 169 YAARREML 176

[Close]

BLAST of CsGy6G011600.1 vs. TrEMBL
Match: tr|A0A2P5R992|A0A2P5R992_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 107 GGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           G E+     GGM+GGKKAGI  GV+AA C VG GG VYKKRQ+NIRRSQYG AARS FL
Sbjct: 103 GSEEKSRGDGGMSGGKKAGIVFGVVAAACLVGFGGLVYKKRQENIRRSQYGYAARSEFL 161

The following BLAST results are available for this feature:

BLAST of CsGy6G011600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656995.1	5.8e-41	100.00	PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KG...	[more]
XP_008463942.2	2.4e-26	97.06	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ...	[more]
XP_022986136.1	4.3e-20	83.82	proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima]	[more]
XP_022995398.1	7.4e-20	84.85	lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]	[more]
XP_022958106.1	4.5e-17	92.31	lysine-rich arabinogalactan protein 18-like [Cucurbita moschata]	[more]

BLAST of CsGy6G011600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45230.1	1.6e-13	62.90	hydroxyproline-rich glycoprotein family protein	[more]
AT2G28440.1	8.1e-05	41.54	proline-rich family protein	[more]
AT5G60630.1	2.4e-04	58.82	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CsGy6G011600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G011600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGE9\|A0A0A0KGE9_CUCSA	3.8e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1	[more]
tr\|A0A1S3CKF5\|A0A1S3CKF5_CUCME	1.6e-26	97.06	pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3...	[more]
tr\|A0A2P5FTY5\|A0A2P5FTY5_9ROSA	8.0e-15	77.59	Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=...	[more]
tr\|A0A2P5DU49\|A0A2P5DU49_PARAD	5.8e-13	66.18	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE...	[more]
tr\|A0A2P5R992\|A0A2P5R992_GOSBA	1.3e-12	69.49	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G011600	CsGy6G011600	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G011600.1.CDS.2	CsGy6G011600.1.CDS.2	CDS
CsGy6G011600.1.CDS.1	CsGy6G011600.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G011600.1.exon.2	CsGy6G011600.1.exon.2	exon
CsGy6G011600.1.exon.1	CsGy6G011600.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G011600.1	CsGy6G011600.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..116