CsGy6G011340.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy6G011340.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 9822172 .. 9824591 (+)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATGTAATGAGTCTGTGATATAGTGTAATTCAAAACTTGACTTGTAATATCAAACTCATTCTAGTAGTCTTCCAGTTTCCTACTTAATTCTCTTTTCCATTCTTTTGTCACTCTTCACGACTCATTTCTTTGTCTTATTTTCATCTTTTTAAAAAAGAAACATTAAATTTGAATTCATAATCAAATTCTAAAAGAAAATATAAGTTTTTCAGAAACTATTTTTACTCAAGTTTTTCAAACAACTATACTTGTCGACTTTCGACGACCAAATCACGAATAACATAGGACATCATTTTGGAAGACACGATAGCCCTGAATTGGTCTTTTTGGTCAACTAAATCCTATATTCTTTTTCATAATTATGATGCTTCTACCATTGCCCTCCCACTAGCACGTATCTTTGTAGCTCTCTTATTTTCGTGTTAGATTTCTCTCACACGTCTTTCCTTAAATATCATTTTCTAATTTTCTTACAATACTTAGCTTAGATTTTTTTAGAACACCCATACAAAGCTGGGGTAGTTATCAAAACAAATAAATCTCTATAAGAAAAATTGTGTTAATTTAGAGATTGAAAAAAAAAACATGGGGGTGCGAGGTTAAAATTAAAACAAAAAGTAACCAGTTAAGATATTCCAAATGGGTGTAAGTTGTTGGCCCTAAATTTGGCCTCAAAATCAAAGATGCATATGAAATCATTTAGGAATTGAGAAAAAGGTGATGGGGGTCACATTAGGGTTTTGGGAGAGATCTTGTCATGTTAAGACAGCACTAAGTATGCATATAATTGAGCCTTGAGAAGTGGGTGACCTATTCTGTGGGTGACTTATTGCCTCCTTGGATGTGTTTTACAAAGACACTTTCATGGATTCTTTCCCTTTTTTCCTACTTGTAGTTTTGGTGGTTGATAAGCCATTTAAACATATAGATTCTTTTCTTTCCTACCATATCAATAAAAGATAAACCAAACCCTTTGAAAAGCCATCTCAATTGTTGAAGATGCGAACATTGTCTTACATCAAATACGAATGAATGAATAAATAAAATGGATCGTTCCGTGCATGTAAGAGTATTTTAGGACTTTTTATACACTTATAGACTTAAATACATAGACTCAATTCTACAATTAAAAAGTTTAATATTTTAATAAGAATAATCTAATAACTTATTATTTTAAGCGAAAATTGACCAAATTTACTTTATAAATGAAATCTCTTGACTAGAAACAAATATTAATGTGAAAATCCTACATTAAATGAACATTAACTGAAATAATAAATTTAACCAAAAAAAGAATTAAATTAAAAAATATTTCCCCCTCTATATAGAACAAAACCACTAAAATACAAACTTTATACACTTAATTTCACAATGAAGGATAAACATTTTGTCAAATGTTATAGCTTTTTTAATTTCTCAAAATTTTCTTAACAAGATAATTTAAAATCTAAAACATTTATAAAATATGTGATATACAATAGATAGATGTTCCAGGCGAAGAACTTTAGTGTAAAATAGACAATCTGTAACATACAAATGTGGGGTTTATTGAAAAGTTCCATGAGTTTCAAGCCCACTGGAAACTCATACATGAGCCCAACTTTAATTTGTTATATAGTGTATGTATATCAGTATGTATATGACCCTCTATGAGAGAGTGCTATAGTATGTAGTGGTTAATTGGAGCATGAGTTGGATAATGGCTATTCTGTTGTTTTCTATTCTTATTTCTATGCTTAAGAATGTCCATGTTTATACAAAGTTTTGGGATCTTAATTTTGTAAAAATATTGAGGTTGATGGTGTATTTTGAAATAAAAATTAAAAGCAAACATTTTTTATACCAGTTAAAATATTTAATTATTGATATCATAATAATTTATATTCACATTCTCCTTACTTTGATGCTTATTTTTCATATTTAATGGATTTTTAAAGATATAATCAGAACATTGATTCATCCTTAAATATTTCTTATGTTTCTCTTTCTTATGCTTTGCTGCTCCTCCCATGGTGAATTAGTGTCTGTCGAGGTAAGCGAACTGGATTCCCCCAAGTGGCTGGAAAATTAAAAACTAATACAGCTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGGTGAGCTTTCAAAAGGTTGTAGAAACAATGGAAGATCAAATGCTTAGAGATGAAAAACTATTGAGAATTTAAGATGGGCTTGAGGGCCTTGCTATTGCGTTTCTAGTCTTTGATGCCATTGTTGGTTGTAGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

mRNA sequence

ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATTGTATGTATATCACTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

Coding sequence (CDS)

ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATTGTATGTATATCACTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

Protein sequence

MHCQTVWTMSVIVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVMFRC
Homology
[Close]
BLAST of CsGy6G011340.1 vs. NCBI nr
Match: KGN46812.1 (hypothetical protein Csa_6G138630 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 12 IVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVM 71
          +V + LGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYH +
Sbjct: 10 LVSVELGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHFL 68

[Close]
BLAST of CsGy6G011340.1 vs. TrEMBL
Match: tr|A0A0A0KEH0|A0A0A0KEH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138630 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 12 IVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVM 71
          +V + LGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYH +
Sbjct: 10 LVSVELGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHFL 68

The following BLAST results are available for this feature:
BLAST of CsGy6G011340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46812.11.0e-1989.83hypothetical protein Csa_6G138630 [Cucumis sativus][more]
BLAST of CsGy6G011340.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G011340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G011340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEH0|A0A0A0KEH0_CUCSA6.6e-2089.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G011340CsGy6G011340gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G011340.1CsGy6G011340.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G011340.1.exon.1CsGy6G011340.1.exon.1exon
CsGy6G011340.1.exon.2CsGy6G011340.1.exon.2exon
CsGy6G011340.1.exon.3CsGy6G011340.1.exon.3exon
CsGy6G011340.1.exon.4CsGy6G011340.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G011340.1.CDS.1CsGy6G011340.1.CDS.1CDS
CsGy6G011340.1.CDS.2CsGy6G011340.1.CDS.2CDS
CsGy6G011340.1.CDS.3CsGy6G011340.1.CDS.3CDS
CsGy6G011340.1.CDS.4CsGy6G011340.1.CDS.4CDS