CsGy6G011340 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G011340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 9822172 .. 9824591 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATGTAATGAGTCTGTGATATAGTGTAATTCAAAACTTGACTTGTAATATCAAACTCATTCTAGTAGTCTTCCAGTTTCCTACTTAATTCTCTTTTCCATTCTTTTGTCACTCTTCACGACTCATTTCTTTGTCTTATTTTCATCTTTTTAAAAAAGAAACATTAAATTTGAATTCATAATCAAATTCTAAAAGAAAATATAAGTTTTTCAGAAACTATTTTTACTCAAGTTTTTCAAACAACTATACTTGTCGACTTTCGACGACCAAATCACGAATAACATAGGACATCATTTTGGAAGACACGATAGCCCTGAATTGGTCTTTTTGGTCAACTAAATCCTATATTCTTTTTCATAATTATGATGCTTCTACCATTGCCCTCCCACTAGCACGTATCTTTGTAGCTCTCTTATTTTCGTGTTAGATTTCTCTCACACGTCTTTCCTTAAATATCATTTTCTAATTTTCTTACAATACTTAGCTTAGATTTTTTTAGAACACCCATACAAAGCTGGGGTAGTTATCAAAACAAATAAATCTCTATAAGAAAAATTGTGTTAATTTAGAGATTGAAAAAAAAAACATGGGGGTGCGAGGTTAAAATTAAAACAAAAAGTAACCAGTTAAGATATTCCAAATGGGTGTAAGTTGTTGGCCCTAAATTTGGCCTCAAAATCAAAGATGCATATGAAATCATTTAGGAATTGAGAAAAAGGTGATGGGGGTCACATTAGGGTTTTGGGAGAGATCTTGTCATGTTAAGACAGCACTAAGTATGCATATAATTGAGCCTTGAGAAGTGGGTGACCTATTCTGTGGGTGACTTATTGCCTCCTTGGATGTGTTTTACAAAGACACTTTCATGGATTCTTTCCCTTTTTTCCTACTTGTAGTTTTGGTGGTTGATAAGCCATTTAAACATATAGATTCTTTTCTTTCCTACCATATCAATAAAAGATAAACCAAACCCTTTGAAAAGCCATCTCAATTGTTGAAGATGCGAACATTGTCTTACATCAAATACGAATGAATGAATAAATAAAATGGATCGTTCCGTGCATGTAAGAGTATTTTAGGACTTTTTATACACTTATAGACTTAAATACATAGACTCAATTCTACAATTAAAAAGTTTAATATTTTAATAAGAATAATCTAATAACTTATTATTTTAAGCGAAAATTGACCAAATTTACTTTATAAATGAAATCTCTTGACTAGAAACAAATATTAATGTGAAAATCCTACATTAAATGAACATTAACTGAAATAATAAATTTAACCAAAAAAAGAATTAAATTAAAAAATATTTCCCCCTCTATATAGAACAAAACCACTAAAATACAAACTTTATACACTTAATTTCACAATGAAGGATAAACATTTTGTCAAATGTTATAGCTTTTTTAATTTCTCAAAATTTTCTTAACAAGATAATTTAAAATCTAAAACATTTATAAAATATGTGATATACAATAGATAGATGTTCCAGGCGAAGAACTTTAGTGTAAAATAGACAATCTGTAACATACAAATGTGGGGTTTATTGAAAAGTTCCATGAGTTTCAAGCCCACTGGAAACTCATACATGAGCCCAACTTTAATTTGTTATATAGTGTATGTATATCAGTATGTATATGACCCTCTATGAGAGAGTGCTATAGTATGTAGTGGTTAATTGGAGCATGAGTTGGATAATGGCTATTCTGTTGTTTTCTATTCTTATTTCTATGCTTAAGAATGTCCATGTTTATACAAAGTTTTGGGATCTTAATTTTGTAAAAATATTGAGGTTGATGGTGTATTTTGAAATAAAAATTAAAAGCAAACATTTTTTATACCAGTTAAAATATTTAATTATTGATATCATAATAATTTATATTCACATTCTCCTTACTTTGATGCTTATTTTTCATATTTAATGGATTTTTAAAGATATAATCAGAACATTGATTCATCCTTAAATATTTCTTATGTTTCTCTTTCTTATGCTTTGCTGCTCCTCCCATGGTGAATTAGTGTCTGTCGAGGTAAGCGAACTGGATTCCCCCAAGTGGCTGGAAAATTAAAAACTAATACAGCTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGGTGAGCTTTCAAAAGGTTGTAGAAACAATGGAAGATCAAATGCTTAGAGATGAAAAACTATTGAGAATTTAAGATGGGCTTGAGGGCCTTGCTATTGCGTTTCTAGTCTTTGATGCCATTGTTGGTTGTAGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

mRNA sequence

ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATTGTATGTATATCACTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

Coding sequence (CDS)

ATGCATTGTCAGACTGTTTGGACGATGTCTGTAATTGTATGTATATCACTTGGTGTGGTAGGCTCAGGTGGAGTGATGTGGGTTGGATCATCTGTGACTCTGATCTACTGGATCCTTGATGAGGAATCCAACTTGTCTGAGGCTATTTCTGCTTTGTTGGACCTGAATAATGACCTCTCTGAAATCAAGAATATAATCTATCATGTAATGTTCAGATGTTAA

Protein sequence

MHCQTVWTMSVIVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVMFRC
Homology
[Close]
BLAST of CsGy6G011340 vs. NCBI nr
Match: KGN46812.1 (hypothetical protein Csa_6G138630 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 12 IVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVM 71
          +V + LGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYH +
Sbjct: 10 LVSVELGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHFL 68

[Close]
BLAST of CsGy6G011340 vs. TrEMBL
Match: tr|A0A0A0KEH0|A0A0A0KEH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138630 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 12 IVCISLGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHVM 71
          +V + LGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYH +
Sbjct: 10 LVSVELGVVGSGGVMWVGSSVTLIYWILDEESNLSEAISALLDLNNDLSEIKNIIYHFL 68

The following BLAST results are available for this feature:
BLAST of CsGy6G011340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46812.11.0e-1989.83hypothetical protein Csa_6G138630 [Cucumis sativus][more]
BLAST of CsGy6G011340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G011340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G011340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEH0|A0A0A0KEH0_CUCSA6.6e-2089.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G011340.1CsGy6G011340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G011340Csa6G138630Cucumber (Chinese Long) v2cgybcuB282
CsGy6G011340CsaV3_6G013660Cucumber (Chinese Long) v3cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G011340Wild cucumber (PI 183967)cgybcpiB288
CsGy6G011340Wild cucumber (PI 183967)cgybcpiB296
CsGy6G011340Silver-seed gourdcarcgybB0028
CsGy6G011340Silver-seed gourdcarcgybB0031
CsGy6G011340Silver-seed gourdcarcgybB0347
CsGy6G011340Silver-seed gourdcarcgybB0400
CsGy6G011340Silver-seed gourdcarcgybB0537
CsGy6G011340Cucumber (Chinese Long) v3cgybcucB307
CsGy6G011340Watermelon (97103) v2cgybwmbB419
CsGy6G011340Watermelon (97103) v2cgybwmbB485
CsGy6G011340Wax gourdcgybwgoB537
CsGy6G011340Wax gourdcgybwgoB569
CsGy6G011340Cucumber (Gy14) v2cgybcgybB155
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB711
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB783
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB790
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB800
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB811
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB814
CsGy6G011340Cucurbita maxima (Rimu)cgybcmaB827
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB695
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB762
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB769
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB778
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB791
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB793
CsGy6G011340Cucurbita moschata (Rifu)cgybcmoB805
CsGy6G011340Cucurbita pepo (Zucchini)cgybcpeB750
CsGy6G011340Cucurbita pepo (Zucchini)cgybcpeB756
CsGy6G011340Cucurbita pepo (Zucchini)cgybcpeB843
CsGy6G011340Cucurbita pepo (Zucchini)cgybcpeB853
CsGy6G011340Cucurbita pepo (Zucchini)cgybcpeB863
CsGy6G011340Cucumber (Chinese Long) v2cgybcuB290
CsGy6G011340Bottle gourd (USVL1VR-Ls)cgyblsiB372
CsGy6G011340Bottle gourd (USVL1VR-Ls)cgyblsiB390
CsGy6G011340Melon (DHL92) v3.5.1cgybmeB368
CsGy6G011340Melon (DHL92) v3.5.1cgybmeB400
CsGy6G011340Melon (DHL92) v3.6.1cgybmedB383
CsGy6G011340Melon (DHL92) v3.6.1cgybmedB399
CsGy6G011340Watermelon (Charleston Gray)cgybwcgB387
CsGy6G011340Watermelon (Charleston Gray)cgybwcgB413
CsGy6G011340Watermelon (97103) v1cgybwmB418
CsGy6G011340Watermelon (97103) v1cgybwmB489