CsGy6G010660.1 (mRNA) Cucumber (Gy14) v2

NameCsGy6G010660.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionClathrin light chain
LocationChr6 : 9139181 .. 9141444 (-)
Sequence length1050
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAAGTTTGATACTGTGCAAAATTCTTATCTCTATTACGCATCATTTTTGTTAGCTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGTTGCAGGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGGTTGGGCTGTGATCATTTTGAATTTTCTGTCTTGTTGCACAATCTAAGTCAGATGAGGTGGAATGGGAATTGTTTTGGAACCATATTTCTCTTTTATCTCTTAATTTCAAGAGAAATTGGTTTCTCATCTTTTTTAATCTGTTCTTAGCTATTTGCTATTAATCTGAAAACTTTATAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGGTGAAACCTCTGAAAGCATTGTGTATACACTGATCTTCTTTACCCTGCATCCTATCAATGCCTTCTTGCTATGTATTGTTACTTATTTTTCAAATCTTTTCCAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGTAAGAAATTATTAATACTTCATCTTATGTTTTATTGTAACTGAATGATTATTTTTCTCTGTTCACAATTTATCACAGGGAATAAGGAGGAAGCTTTCGTTATGGCCATGCTGCTTTGCATTCCCTGCAGCGTGGGATTTGACAGCTCTCTTGTTGAGACTTAGAATTTAGGCCGATTTGTCATTGAATTTTATTATCATCTCTTCGAGACTGAGCTTCTCTTATATACTCCTTTTGTTACAGATGATAGAAAAGGTAATAATACAGACTTGCAAAGTTGTAGTAGAGCAGCTCATGTTATTTGTCACACATAATTAATTATCCTAGGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGGTGAGCAGTTTGACCATCTATTTATTCTCCCCTTTTAACACTACGGGGAGTTCAACCAACCCGGGTAACATTCTAAGGAAGGAGGAAAGGAAAATGGTTGGGAATGGATGCATTTTGGTTGCACTCATCTGTGTACATCTTGTCAACCATACAGTGATGAGTGCACTGTATTCAAGCATGACGGTTGTATATACATATACATGTATATACCAGAGAGAAATGAGAGATTCAACACACATAATGGTTGGTTTGTTGGATTGGAAGTAACATATGGAATTGAAATGGGATTAAGAGTCCAAATGAACAGAAGGTCAGGTAAGACTAAGTTTACATTAACTAATTGTATTAAAGATATGGAGCCACCAACTAGGATTATTAAGATCTATCAAGATGTAATACAAGGCCAAGCCAGGAAGTAGCAATTTATTAGGAGATAGGTCATAAGCTAGCAAGTTATTAGTTGATAGGCCATCAAGCACAGTGCCTTTGTCTGAAACAATATCTAGGTCTACAAAGTCATTTAAAAATGTTCTATGATGTAAATTCAGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

mRNA sequence

ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAACTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

Coding sequence (CDS)

ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAACTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

Protein sequence

MGTEKRATLNSVCLKKFLSDSLGTGFMGHSSFNFQGRNGYPGYIGLGISFNPWLIVKCSQNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFHKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLKLKQTPPPHMMPPPPKPAKDEKDGKDGKDGEGGKDGKDSKDGKDTKEGTENKGGKEASEGTETKDSKEEGKEVDEKKASSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQAVLLVSPSAEEYSRVVMVIEPITRNRIAAPGTGGAPGVKYNVNKKRDLRIQ
BLAST of CsGy6G010660.1 vs. NCBI nr
Match: XP_011656953.1 (PREDICTED: clathrin light chain 1 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 3.5e-86
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAEE 310
           VLLVSPSAEE
Sbjct: 403 VLLVSPSAEE 412

BLAST of CsGy6G010660.1 vs. NCBI nr
Match: KGN46749.1 (hypothetical protein Csa_6G128590 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-85
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAE 309
           VLLVSPSAE
Sbjct: 403 VLLVSPSAE 411

BLAST of CsGy6G010660.1 vs. NCBI nr
Match: XP_008448281.1 (PREDICTED: clathrin light chain 1 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 8.8e-74
Identity = 217/255 (85.10%), Postives = 223/255 (87.45%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKE+RNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 162 QNAIDLEEKEKKEKEVRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 221

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD KPSI+VVQGPKPGKPTDL+R+RQILL
Sbjct: 222 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDNKPSIVVVQGPKPGKPTDLSRMRQILL 281

Query: 180 KLKQTP-----PPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 282 KLKQTPXXXXXXXXXXLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVA 299
           XXXXXXX                SSPA VLTPTSPAINMDANGTPDQPIIEVEA PPPVA
Sbjct: 342 XXXXXXXTKDAKEEGKEVDEKKASSPAAVLTPTSPAINMDANGTPDQPIIEVEA-PPPVA 401

Query: 300 DAEQAVLLVSPSAEE 310
           D+EQAV LVSPSAEE
Sbjct: 402 DSEQAVPLVSPSAEE 415

BLAST of CsGy6G010660.1 vs. NCBI nr
Match: XP_023532092.1 (clathrin light chain 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.1 bits (614), Expect = 5.6e-60
Identity = 119/131 (90.84%), Postives = 127/131 (96.95%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDL +KEKKEKEMRNQIINEAEEYKASFYEKRR+NCETNKAHNREREKLYH NQE+F
Sbjct: 151 QNAIDLAEKEKKEKEMRNQIINEAEEYKASFYEKRRINCETNKAHNREREKLYHTNQEKF 210

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKH+WKAIAEIIPREVPNIEKRRGKKD + KPSI++VQGPKPGKPTDLAR+RQILL
Sbjct: 211 HKEADKHFWKAIAEIIPREVPNIEKRRGKKDAENKPSIVIVQGPKPGKPTDLARMRQILL 270

Query: 180 KLKQTPPPHMM 191
           KLKQTPPPHMM
Sbjct: 271 KLKQTPPPHMM 281

BLAST of CsGy6G010660.1 vs. NCBI nr
Match: XP_022140721.1 (clathrin light chain 1 [Momordica charantia])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 120/131 (91.60%), Postives = 128/131 (97.71%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKEMRNQIINEAEEYKASFYEKRR+NCETNKAHNREREKLY ANQE+F
Sbjct: 225 QNAIDLEEKEKKEKEMRNQIINEAEEYKASFYEKRRLNCETNKAHNREREKLYLANQEKF 284

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKH+WKAIAEIIPREVPNIEKRRGKKD + KPSI+V+QGPKPGKPTDLAR+RQILL
Sbjct: 285 HKEADKHFWKAIAEIIPREVPNIEKRRGKKDAENKPSIVVIQGPKPGKPTDLARMRQILL 344

Query: 180 KLKQTPPPHMM 191
           KLKQTPPPHMM
Sbjct: 345 KLKQTPPPHMM 355

BLAST of CsGy6G010660.1 vs. TAIR10
Match: AT2G20760.1 (Clathrin light chain protein)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-49
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0

Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           N I LE+KEKKEKEMRNQII EAE++K +FYEKR    ETNK  NRE+EKLY ANQE+FH
Sbjct: 118 NTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFH 177

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KE DKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPS+ V+QGPKPGKPTDL R+RQI LK
Sbjct: 178 KEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLK 237

Query: 181 LKQTP 186
           LK  P
Sbjct: 238 LKTNP 242

BLAST of CsGy6G010660.1 vs. TAIR10
Match: AT3G51890.1 (Clathrin light chain protein)

HSP 1 Score: 142.1 bits (357), Expect = 6.4e-34
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 0

Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NA+ LE+KEK+EKEM  QI+  AE+YKA FY KR V  E NK  NRE+EK +  N    +
Sbjct: 107 NALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENXXXXY 166

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
            EADK+ WKAIAE+IPREVP IE R  KK   K  +I V+QGPKPGKPTDL+R+RQ+L K
Sbjct: 167 AEADKNNWKAIAELIPREVPVIENRGNKK---KTATITVIQGPKPGKPTDLSRMRQVLTK 226

Query: 181 LKQTPPPHM 190
           LK  PP HM
Sbjct: 227 LKHNPPTHM 232

BLAST of CsGy6G010660.1 vs. TAIR10
Match: AT2G40060.1 (Clathrin light chain protein)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-33
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+  QII EA++YK  F++K  V CE NKA NRE+           
Sbjct: 97  QNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKXXXXXXXXXXX 156

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
                   WKAIAE++P+EVP IEKRRGKK+    KKP++ V+QGPKPGKPTDL R+RQI
Sbjct: 157 XXXXXXXXWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQI 216

Query: 180 LLKLKQTPPPHM 190
           L+KLK  PP H+
Sbjct: 217 LVKLKHNPPSHL 228

BLAST of CsGy6G010660.1 vs. Swiss-Prot
Match: sp|Q9SKU1|CLC1_ARATH (Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-48
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0

Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           N I LE+KEKKEKEMRNQII EAE++K +FYEKR    ETNK  NRE+EKLY ANQE+FH
Sbjct: 118 NTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFH 177

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KE DKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPS+ V+QGPKPGKPTDL R+RQI LK
Sbjct: 178 KEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLK 237

Query: 181 LKQTP 186
           LK  P
Sbjct: 238 LKTNP 242

BLAST of CsGy6G010660.1 vs. Swiss-Prot
Match: sp|Q7XKE9|CLC1_ORYSJ (Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-46
Identity = 95/131 (72.52%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KE+KEKE+R QI+ EAEE+K +FYEKR  NCETNK HNREREK++ A QE+F
Sbjct: 118 QNAIVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKF 177

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           H EADK YWK+I+E+IP E+  IEK RGKKD DKKPSI V+QGPKPGKPTDL+R+RQIL+
Sbjct: 178 HAEADKQYWKSISELIPHEIATIEK-RGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILV 237

Query: 180 KLKQTPPPHMM 191
           KLK  PPPHMM
Sbjct: 238 KLKHAPPPHMM 247

BLAST of CsGy6G010660.1 vs. Swiss-Prot
Match: sp|Q5Z402|CLC2_ORYSJ (Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-41
Identity = 90/127 (70.87%), Postives = 107/127 (84.25%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEKKEKEMRNQII +A+E+K +F EKR++N ET+K  NREREKLY ANQE+F
Sbjct: 100 QNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKF 159

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
           H  ADK YWKAI+E+IP E+ NIEKR  KKD D  KKP I+V+QGPKPGKPTD++R+RQI
Sbjct: 160 HAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQI 219

Query: 180 LLKLKQT 185
           LLKLK T
Sbjct: 220 LLKLKHT 226

BLAST of CsGy6G010660.1 vs. Swiss-Prot
Match: sp|F4J5M9|CLC3_ARATH (Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-32
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 0

Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NA+ LE+KEK+EKEM  QI+  AE+YKA FY KR V  E NK  NRE+EK +  N    +
Sbjct: 107 NALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENXXXXY 166

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
            EADK+ WKAIAE+IPREVP IE R  KK   K  +I V+QGPKPGKPTDL+R+RQ+L K
Sbjct: 167 AEADKNNWKAIAELIPREVPVIENRGNKK---KTATITVIQGPKPGKPTDLSRMRQVLTK 226

Query: 181 LKQTPPPHM 190
           LK  PP HM
Sbjct: 227 LKHNPPTHM 232

BLAST of CsGy6G010660.1 vs. Swiss-Prot
Match: sp|O04209|CLC2_ARATH (Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-31
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+  QII EA++YK  F++K  V CE NKA NRE+           
Sbjct: 97  QNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKXXXXXXXXXXX 156

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
                   WKAIAE++P+EVP IEKRRGKK+    KKP++ V+QGPKPGKPTDL R+RQI
Sbjct: 157 XXXXXXXXWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQI 216

Query: 180 LLKLKQTPPPHM 190
           L+KLK  PP H+
Sbjct: 217 LVKLKHNPPSHL 228

BLAST of CsGy6G010660.1 vs. TrEMBL
Match: tr|A0A0A0KD26|A0A0A0KD26_CUCSA (Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.7e-86
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAE 309
           VLLVSPSAE
Sbjct: 403 VLLVSPSAE 411

BLAST of CsGy6G010660.1 vs. TrEMBL
Match: tr|A0A1S3BJB2|A0A1S3BJB2_CUCME (Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.8e-74
Identity = 217/255 (85.10%), Postives = 223/255 (87.45%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKE+RNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 162 QNAIDLEEKEKKEKEVRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 221

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD KPSI+VVQGPKPGKPTDL+R+RQILL
Sbjct: 222 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDNKPSIVVVQGPKPGKPTDLSRMRQILL 281

Query: 180 KLKQTP-----PPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 282 KLKQTPXXXXXXXXXXLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVA 299
           XXXXXXX                SSPA VLTPTSPAINMDANGTPDQPIIEVEA PPPVA
Sbjct: 342 XXXXXXXTKDAKEEGKEVDEKKASSPAAVLTPTSPAINMDANGTPDQPIIEVEA-PPPVA 401

Query: 300 DAEQAVLLVSPSAEE 310
           D+EQAV LVSPSAEE
Sbjct: 402 DSEQAVPLVSPSAEE 415

BLAST of CsGy6G010660.1 vs. TrEMBL
Match: tr|A0A2P6RTR4|A0A2P6RTR4_ROSCH (Clathrin light chain OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126241 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.2e-56
Identity = 111/130 (85.38%), Postives = 125/130 (96.15%), Query Frame = 0

Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NAI LE+KEK+EKEMRNQII EAEE+K +FYEKR++NCETNKA+NREREKLY ANQE+FH
Sbjct: 145 NAIHLEEKEKREKEMRNQIIEEAEEFKRAFYEKRKLNCETNKANNREREKLYLANQEKFH 204

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KEADKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPSI+V+QGPKPGKPTDL+R+RQI LK
Sbjct: 205 KEADKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSIVVIQGPKPGKPTDLSRMRQIFLK 264

Query: 181 LKQTPPPHMM 191
           LKQTPPPHMM
Sbjct: 265 LKQTPPPHMM 274

BLAST of CsGy6G010660.1 vs. TrEMBL
Match: tr|A0A200PQQ8|A0A200PQQ8_9MAGN (Clathrin light chain OS=Macleaya cordata OX=56857 GN=BVC80_9087g57 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.9e-55
Identity = 110/131 (83.97%), Postives = 123/131 (93.89%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKEMRNQII EAEEYK +FYEKR++NCETNK +NREREKLY ANQE+F
Sbjct: 169 QNAIQLEEKEKREKEMRNQIIEEAEEYKRAFYEKRKLNCETNKTNNREREKLYLANQEKF 228

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADK YWKAIAE+IP EVPNIEK+RGKKDPDKKPSI+VVQGPKPGKPTDLAR+RQ+LL
Sbjct: 229 HKEADKQYWKAIAELIPHEVPNIEKKRGKKDPDKKPSIVVVQGPKPGKPTDLARMRQVLL 288

Query: 180 KLKQTPPPHMM 191
           KLK TPPPHM+
Sbjct: 289 KLKHTPPPHMI 299

BLAST of CsGy6G010660.1 vs. TrEMBL
Match: tr|A0A2P5B4C3|A0A2P5B4C3_PARAD (Clathrin light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_271960 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.4e-53
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 0

Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+RNQII EAEEYK SFYEKR+  CETNKA+NREREKLY ANQE+F
Sbjct: 143 QNAIHLEEKEKREKELRNQIIEEAEEYKRSFYEKRKTTCETNKANNREREKLYLANQEKF 202

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEK+RGKK+ +KKPS++VVQGPKPGKPTDL+R+R ILL
Sbjct: 203 HKEADKHYWKAIAEIIPREVPNIEKKRGKKEAEKKPSVVVVQGPKPGKPTDLSRMRHILL 262

Query: 180 KLKQTPPPH 189
           KLKQ+PPPH
Sbjct: 263 KLKQSPPPH 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011656953.13.5e-86100.00PREDICTED: clathrin light chain 1 [Cucumis sativus][more]
KGN46749.11.3e-85100.00hypothetical protein Csa_6G128590 [Cucumis sativus][more]
XP_008448281.18.8e-7485.10PREDICTED: clathrin light chain 1 [Cucumis melo][more]
XP_023532092.15.6e-6090.84clathrin light chain 1-like [Cucurbita pepo subsp. pepo][more]
XP_022140721.11.2e-5991.60clathrin light chain 1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G20760.11.8e-4977.60Clathrin light chain protein[more]
AT3G51890.16.4e-3460.47Clathrin light chain protein[more]
AT2G40060.17.1e-3356.06Clathrin light chain protein[more]
Match NameE-valueIdentityDescription
sp|Q9SKU1|CLC1_ARATH3.3e-4877.60Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1[more]
sp|Q7XKE9|CLC1_ORYSJ1.8e-4672.52Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 ... [more]
sp|Q5Z402|CLC2_ORYSJ5.2e-4170.87Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 ... [more]
sp|F4J5M9|CLC3_ARATH1.2e-3260.47Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1[more]
sp|O04209|CLC2_ARATH1.3e-3156.06Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KD26|A0A0A0KD26_CUCSA8.7e-86100.00Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1[more]
tr|A0A1S3BJB2|A0A1S3BJB2_CUCME5.8e-7485.10Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1[more]
tr|A0A2P6RTR4|A0A2P6RTR4_ROSCH7.2e-5685.38Clathrin light chain OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126241 PE=3 SV... [more]
tr|A0A200PQQ8|A0A200PQQ8_9MAGN7.9e-5583.97Clathrin light chain OS=Macleaya cordata OX=56857 GN=BVC80_9087g57 PE=3 SV=1[more]
tr|A0A2P5B4C3|A0A2P5B4C3_PARAD7.4e-5382.95Clathrin light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_271960 PE=3 ... [more]
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0072583 clathrin-dependent endocytosis
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
cellular_component GO:0005829 cytosol
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0032050 clathrin heavy chain binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G010660CsGy6G010660gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G010660.1.CDS.7CsGy6G010660.1.CDS.7CDS
CsGy6G010660.1.CDS.6CsGy6G010660.1.CDS.6CDS
CsGy6G010660.1.CDS.5CsGy6G010660.1.CDS.5CDS
CsGy6G010660.1.CDS.4CsGy6G010660.1.CDS.4CDS
CsGy6G010660.1.CDS.3CsGy6G010660.1.CDS.3CDS
CsGy6G010660.1.CDS.2CsGy6G010660.1.CDS.2CDS
CsGy6G010660.1.CDS.1CsGy6G010660.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G010660.1.exon.7CsGy6G010660.1.exon.7exon
CsGy6G010660.1.exon.6CsGy6G010660.1.exon.6exon
CsGy6G010660.1.exon.5CsGy6G010660.1.exon.5exon
CsGy6G010660.1.exon.4CsGy6G010660.1.exon.4exon
CsGy6G010660.1.exon.3CsGy6G010660.1.exon.3exon
CsGy6G010660.1.exon.2CsGy6G010660.1.exon.2exon
CsGy6G010660.1.exon.1CsGy6G010660.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G010660.1CsGy6G010660.1-proteinpolypeptide


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..349
NoneNo IPR availablePANTHERPTHR10639:SF8CLATHRIN LIGHT CHAIN 1coord: 59..246
IPR000996Clathrin light chainPANTHERPTHR10639CLATHRIN LIGHT CHAINcoord: 59..246