CsGy6G010660 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G010660
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Clathrin light chain
Location	Chr6 : 9139181 .. 9141444 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAAGTTTGATACTGTGCAAAATTCTTATCTCTATTACGCATCATTTTTGTTAGCTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGTTGCAGGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGGTTGGGCTGTGATCATTTTGAATTTTCTGTCTTGTTGCACAATCTAAGTCAGATGAGGTGGAATGGGAATTGTTTTGGAACCATATTTCTCTTTTATCTCTTAATTTCAAGAGAAATTGGTTTCTCATCTTTTTTAATCTGTTCTTAGCTATTTGCTATTAATCTGAAAACTTTATAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGGTGAAACCTCTGAAAGCATTGTGTATACACTGATCTTCTTTACCCTGCATCCTATCAATGCCTTCTTGCTATGTATTGTTACTTATTTTTCAAATCTTTTCCAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGTAAGAAATTATTAATACTTCATCTTATGTTTTATTGTAACTGAATGATTATTTTTCTCTGTTCACAATTTATCACAGGGAATAAGGAGGAAGCTTTCGTTATGGCCATGCTGCTTTGCATTCCCTGCAGCGTGGGATTTGACAGCTCTCTTGTTGAGACTTAGAATTTAGGCCGATTTGTCATTGAATTTTATTATCATCTCTTCGAGACTGAGCTTCTCTTATATACTCCTTTTGTTACAGATGATAGAAAAGGTAATAATACAGACTTGCAAAGTTGTAGTAGAGCAGCTCATGTTATTTGTCACACATAATTAATTATCCTAGGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGGTGAGCAGTTTGACCATCTATTTATTCTCCCCTTTTAACACTACGGGGAGTTCAACCAACCCGGGTAACATTCTAAGGAAGGAGGAAAGGAAAATGGTTGGGAATGGATGCATTTTGGTTGCACTCATCTGTGTACATCTTGTCAACCATACAGTGATGAGTGCACTGTATTCAAGCATGACGGTTGTATATACATATACATGTATATACCAGAGAGAAATGAGAGATTCAACACACATAATGGTTGGTTTGTTGGATTGGAAGTAACATATGGAATTGAAATGGGATTAAGAGTCCAAATGAACAGAAGGTCAGGTAAGACTAAGTTTACATTAACTAATTGTATTAAAGATATGGAGCCACCAACTAGGATTATTAAGATCTATCAAGATGTAATACAAGGCCAAGCCAGGAAGTAGCAATTTATTAGGAGATAGGTCATAAGCTAGCAAGTTATTAGTTGATAGGCCATCAAGCACAGTGCCTTTGTCTGAAACAATATCTAGGTCTACAAAGTCATTTAAAAATGTTCTATGATGTAAATTCAGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

mRNA sequence

ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAACTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

Coding sequence (CDS)

ATGGGAACAGAAAAAAGGGCTACGCTTAATTCTGTCTGCTTGAAGAAGTTTTTATCTGATTCATTGGGAACTGGCTTCATGGGCCACAGTAGTTTCAATTTTCAAGGTCGTAATGGTTACCCAGGTTACATTGGTCTTGGAATTTCTTTTAATCCTTGGCTAATTGTAAAGTGCAGTCAAAATGCCATAGATCTTGAGGACAAAGAGAAGAAAGAAAAGGAGATGAGGAATCAAATAATTAATGAAGCTGAAGAGTATAAAGCATCCTTTTATGAGAAAAGGAGGGTCAATTGTGAAACAAATAAGGCTCACAATAGAGAAAGAGAGAAGCTTTACCATGCTAACCAGGAAAGATTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATTGCAGAGATCATCCCGCGTGAGGTACCTAATATTGAGAAGAGAAGAGGAAAGAAAGATCCTGACAAGAAGCCTTCAATATTGGTCGTTCAGGGTCCAAAACCTGGAAAGCCAACCGATCTAGCACGATTGAGGCAGATCTTGTTGAAGTTGAAACAGACTCCTCCACCTCATATGATGCCTCCTCCACCCAAACCGGCCAAAGATGAAAAGGATGGCAAAGATGGCAAAGATGGAGAAGGTGGCAAGGATGGAAAGGATAGCAAGGATGGAAAAGATACAAAGGAAGGGACGGAGAACAAAGGTGGAAAGGAAGCAAGTGAAGGGACAGAAACCAAAGATTCTAAGGAAGAAGGGAAGGAAGTTGATGAGAAGAAAGCTTCTTCACCAGCTACAGTTCTCACACCTACTTCTCCAGCAATAAATATGGATGCCAATGGCACTCCTGATCAACCCATAATAGAGGTTGAGGCTCCTCCTCCTCCTGTTGCTGATGCCGAACAAGCAGTTCTGTTGGTGTCACCTTCTGCAGAGGAATATTCACGAGTAGTAATGGTTATTGAACCAATCACTAGGAATAGAATAGCTGCCCCAGGGACTGGGGGAGCGCCTGGTGTGAAGTATAATGTTAATAAAAAGCGAGATTTGAGGATACAATAG

Protein sequence

MGTEKRATLNSVCLKKFLSDSLGTGFMGHSSFNFQGRNGYPGYIGLGISFNPWLIVKCSQNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFHKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLKLKQTPPPHMMPPPPKPAKDEKDGKDGKDGEGGKDGKDSKDGKDTKEGTENKGGKEASEGTETKDSKEEGKEVDEKKASSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQAVLLVSPSAEEYSRVVMVIEPITRNRIAAPGTGGAPGVKYNVNKKRDLRIQ

Homology

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BLAST of CsGy6G010660 vs. NCBI nr
Match: XP_011656953.1 (PREDICTED: clathrin light chain 1 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 3.5e-86
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAEE 310
           VLLVSPSAEE
Sbjct: 403 VLLVSPSAEE 412

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BLAST of CsGy6G010660 vs. NCBI nr
Match: KGN46749.1 (hypothetical protein Csa_6G128590 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-85
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAE 309
           VLLVSPSAE
Sbjct: 403 VLLVSPSAE 411

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BLAST of CsGy6G010660 vs. NCBI nr
Match: XP_008448281.1 (PREDICTED: clathrin light chain 1 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 8.8e-74
Identity = 217/255 (85.10%), Postives = 223/255 (87.45%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKE+RNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 162 QNAIDLEEKEKKEKEVRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 221

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD KPSI+VVQGPKPGKPTDL+R+RQILL
Sbjct: 222 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDNKPSIVVVQGPKPGKPTDLSRMRQILL 281

Query: 180 KLKQTP-----PPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 282 KLKQTPXXXXXXXXXXLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVA 299
           XXXXXXX                SSPA VLTPTSPAINMDANGTPDQPIIEVEA PPPVA
Sbjct: 342 XXXXXXXTKDAKEEGKEVDEKKASSPAAVLTPTSPAINMDANGTPDQPIIEVEA-PPPVA 401

Query: 300 DAEQAVLLVSPSAEE 310
           D+EQAV LVSPSAEE
Sbjct: 402 DSEQAVPLVSPSAEE 415

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BLAST of CsGy6G010660 vs. NCBI nr
Match: XP_023532092.1 (clathrin light chain 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.1 bits (614), Expect = 5.6e-60
Identity = 119/131 (90.84%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDL +KEKKEKEMRNQIINEAEEYKASFYEKRR+NCETNKAHNREREKLYH NQE+F
Sbjct: 151 QNAIDLAEKEKKEKEMRNQIINEAEEYKASFYEKRRINCETNKAHNREREKLYHTNQEKF 210

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKH+WKAIAEIIPREVPNIEKRRGKKD + KPSI++VQGPKPGKPTDLAR+RQILL
Sbjct: 211 HKEADKHFWKAIAEIIPREVPNIEKRRGKKDAENKPSIVIVQGPKPGKPTDLARMRQILL 270

Query: 180 KLKQTPPPHMM 191
           KLKQTPPPHMM
Sbjct: 271 KLKQTPPPHMM 281

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BLAST of CsGy6G010660 vs. NCBI nr
Match: XP_022140721.1 (clathrin light chain 1 [Momordica charantia])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 120/131 (91.60%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKEMRNQIINEAEEYKASFYEKRR+NCETNKAHNREREKLY ANQE+F
Sbjct: 225 QNAIDLEEKEKKEKEMRNQIINEAEEYKASFYEKRRLNCETNKAHNREREKLYLANQEKF 284

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKH+WKAIAEIIPREVPNIEKRRGKKD + KPSI+V+QGPKPGKPTDLAR+RQILL
Sbjct: 285 HKEADKHFWKAIAEIIPREVPNIEKRRGKKDAENKPSIVVIQGPKPGKPTDLARMRQILL 344

Query: 180 KLKQTPPPHMM 191
           KLKQTPPPHMM
Sbjct: 345 KLKQTPPPHMM 355

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BLAST of CsGy6G010660 vs. TAIR10
Match: AT2G20760.1 (Clathrin light chain protein)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-49
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           N I LE+KEKKEKEMRNQII EAE++K +FYEKR    ETNK  NRE+EKLY ANQE+FH
Sbjct: 118 NTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFH 177

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KE DKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPS+ V+QGPKPGKPTDL R+RQI LK
Sbjct: 178 KEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLK 237

Query: 181 LKQTP 186
           LK  P
Sbjct: 238 LKTNP 242

[Close]

BLAST of CsGy6G010660 vs. TAIR10
Match: AT3G51890.1 (Clathrin light chain protein)

HSP 1 Score: 142.1 bits (357), Expect = 6.4e-34
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NA+ LE+KEK+EKEM  QI+  AE+YKA FY KR V  E NK  NRE+EK +  N    +
Sbjct: 107 NALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENXXXXY 166

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
            EADK+ WKAIAE+IPREVP IE R  KK   K  +I V+QGPKPGKPTDL+R+RQ+L K
Sbjct: 167 AEADKNNWKAIAELIPREVPVIENRGNKK---KTATITVIQGPKPGKPTDLSRMRQVLTK 226

Query: 181 LKQTPPPHM 190
           LK  PP HM
Sbjct: 227 LKHNPPTHM 232

[Close]

BLAST of CsGy6G010660 vs. TAIR10
Match: AT2G40060.1 (Clathrin light chain protein)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-33
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+  QII EA++YK  F++K  V CE NKA NRE+           
Sbjct: 97  QNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKXXXXXXXXXXX 156

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
                   WKAIAE++P+EVP IEKRRGKK+    KKP++ V+QGPKPGKPTDL R+RQI
Sbjct: 157 XXXXXXXXWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQI 216

Query: 180 LLKLKQTPPPHM 190
           L+KLK  PP H+
Sbjct: 217 LVKLKHNPPSHL 228

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BLAST of CsGy6G010660 vs. Swiss-Prot
Match: sp|Q9SKU1|CLC1_ARATH (Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-48
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           N I LE+KEKKEKEMRNQII EAE++K +FYEKR    ETNK  NRE+EKLY ANQE+FH
Sbjct: 118 NTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFH 177

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KE DKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPS+ V+QGPKPGKPTDL R+RQI LK
Sbjct: 178 KEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLK 237

Query: 181 LKQTP 186
           LK  P
Sbjct: 238 LKTNP 242

[Close]

BLAST of CsGy6G010660 vs. Swiss-Prot
Match: sp|Q7XKE9|CLC1_ORYSJ (Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-46
Identity = 95/131 (72.52%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KE+KEKE+R QI+ EAEE+K +FYEKR  NCETNK HNREREK++ A QE+F
Sbjct: 118 QNAIVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKF 177

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           H EADK YWK+I+E+IP E+  IEK RGKKD DKKPSI V+QGPKPGKPTDL+R+RQIL+
Sbjct: 178 HAEADKQYWKSISELIPHEIATIEK-RGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILV 237

Query: 180 KLKQTPPPHMM 191
           KLK  PPPHMM
Sbjct: 238 KLKHAPPPHMM 247

[Close]

BLAST of CsGy6G010660 vs. Swiss-Prot
Match: sp|Q5Z402|CLC2_ORYSJ (Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-41
Identity = 90/127 (70.87%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEKKEKEMRNQII +A+E+K +F EKR++N ET+K  NREREKLY ANQE+F
Sbjct: 100 QNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKF 159

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
           H  ADK YWKAI+E+IP E+ NIEKR  KKD D  KKP I+V+QGPKPGKPTD++R+RQI
Sbjct: 160 HAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQI 219

Query: 180 LLKLKQT 185
           LLKLK T
Sbjct: 220 LLKLKHT 226

[Close]

BLAST of CsGy6G010660 vs. Swiss-Prot
Match: sp|F4J5M9|CLC3_ARATH (Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-32
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NA+ LE+KEK+EKEM  QI+  AE+YKA FY KR V  E NK  NRE+EK +  N    +
Sbjct: 107 NALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENXXXXY 166

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
            EADK+ WKAIAE+IPREVP IE R  KK   K  +I V+QGPKPGKPTDL+R+RQ+L K
Sbjct: 167 AEADKNNWKAIAELIPREVPVIENRGNKK---KTATITVIQGPKPGKPTDLSRMRQVLTK 226

Query: 181 LKQTPPPHM 190
           LK  PP HM
Sbjct: 227 LKHNPPTHM 232

[Close]

BLAST of CsGy6G010660 vs. Swiss-Prot
Match: sp|O04209|CLC2_ARATH (Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-31
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+  QII EA++YK  F++K  V CE NKA NRE+           
Sbjct: 97  QNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKXXXXXXXXXXX 156

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD--KKPSILVVQGPKPGKPTDLARLRQI 179
                   WKAIAE++P+EVP IEKRRGKK+    KKP++ V+QGPKPGKPTDL R+RQI
Sbjct: 157 XXXXXXXXWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQI 216

Query: 180 LLKLKQTPPPHM 190
           L+KLK  PP H+
Sbjct: 217 LVKLKHNPPSHL 228

[Close]

BLAST of CsGy6G010660 vs. TrEMBL
Match: tr|A0A0A0KD26|A0A0A0KD26_CUCSA (Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.7e-86
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 163 QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 222

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL
Sbjct: 223 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 282

Query: 180 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 KLKQTPPPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 240 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 299
           XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA
Sbjct: 343 XXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVADAEQA 402

Query: 300 VLLVSPSAE 309
           VLLVSPSAE
Sbjct: 403 VLLVSPSAE 411

[Close]

BLAST of CsGy6G010660 vs. TrEMBL
Match: tr|A0A1S3BJB2|A0A1S3BJB2_CUCME (Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.8e-74
Identity = 217/255 (85.10%), Postives = 223/255 (87.45%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAIDLE+KEKKEKE+RNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF
Sbjct: 162 QNAIDLEEKEKKEKEVRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 221

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPD KPSI+VVQGPKPGKPTDL+R+RQILL
Sbjct: 222 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDNKPSIVVVQGPKPGKPTDLSRMRQILL 281

Query: 180 KLKQTP-----PPHMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           KLKQTP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 282 KLKQTPXXXXXXXXXXLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 341

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXSSPATVLTPTSPAINMDANGTPDQPIIEVEAPPPPVA 299
           XXXXXXX                SSPA VLTPTSPAINMDANGTPDQPIIEVEA PPPVA
Sbjct: 342 XXXXXXXTKDAKEEGKEVDEKKASSPAAVLTPTSPAINMDANGTPDQPIIEVEA-PPPVA 401

Query: 300 DAEQAVLLVSPSAEE 310
           D+EQAV LVSPSAEE
Sbjct: 402 DSEQAVPLVSPSAEE 415

[Close]

BLAST of CsGy6G010660 vs. TrEMBL
Match: tr|A0A2P6RTR4|A0A2P6RTR4_ROSCH (Clathrin light chain OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126241 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.2e-56
Identity = 111/130 (85.38%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 61  NAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERFH 120
           NAI LE+KEK+EKEMRNQII EAEE+K +FYEKR++NCETNKA+NREREKLY ANQE+FH
Sbjct: 145 NAIHLEEKEKREKEMRNQIIEEAEEFKRAFYEKRKLNCETNKANNREREKLYLANQEKFH 204

Query: 121 KEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILLK 180
           KEADKHYWKAIAE+IPREVPNIEK+RGKKDPDKKPSI+V+QGPKPGKPTDL+R+RQI LK
Sbjct: 205 KEADKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSIVVIQGPKPGKPTDLSRMRQIFLK 264

Query: 181 LKQTPPPHMM 191
           LKQTPPPHMM
Sbjct: 265 LKQTPPPHMM 274

[Close]

BLAST of CsGy6G010660 vs. TrEMBL
Match: tr|A0A200PQQ8|A0A200PQQ8_9MAGN (Clathrin light chain OS=Macleaya cordata OX=56857 GN=BVC80_9087g57 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.9e-55
Identity = 110/131 (83.97%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKEMRNQII EAEEYK +FYEKR++NCETNK +NREREKLY ANQE+F
Sbjct: 169 QNAIQLEEKEKREKEMRNQIIEEAEEYKRAFYEKRKLNCETNKTNNREREKLYLANQEKF 228

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADK YWKAIAE+IP EVPNIEK+RGKKDPDKKPSI+VVQGPKPGKPTDLAR+RQ+LL
Sbjct: 229 HKEADKQYWKAIAELIPHEVPNIEKKRGKKDPDKKPSIVVVQGPKPGKPTDLARMRQVLL 288

Query: 180 KLKQTPPPHMM 191
           KLK TPPPHM+
Sbjct: 289 KLKHTPPPHMI 299

[Close]

BLAST of CsGy6G010660 vs. TrEMBL
Match: tr|A0A2P5B4C3|A0A2P5B4C3_PARAD (Clathrin light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_271960 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.4e-53
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 60  QNAIDLEDKEKKEKEMRNQIINEAEEYKASFYEKRRVNCETNKAHNREREKLYHANQERF 119
           QNAI LE+KEK+EKE+RNQII EAEEYK SFYEKR+  CETNKA+NREREKLY ANQE+F
Sbjct: 143 QNAIHLEEKEKREKELRNQIIEEAEEYKRSFYEKRKTTCETNKANNREREKLYLANQEKF 202

Query: 120 HKEADKHYWKAIAEIIPREVPNIEKRRGKKDPDKKPSILVVQGPKPGKPTDLARLRQILL 179
           HKEADKHYWKAIAEIIPREVPNIEK+RGKK+ +KKPS++VVQGPKPGKPTDL+R+R ILL
Sbjct: 203 HKEADKHYWKAIAEIIPREVPNIEKKRGKKEAEKKPSVVVVQGPKPGKPTDLSRMRHILL 262

Query: 180 KLKQTPPPH 189
           KLKQ+PPPH
Sbjct: 263 KLKQSPPPH 271

The following BLAST results are available for this feature:

BLAST of CsGy6G010660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656953.1	3.5e-86	100.00	PREDICTED: clathrin light chain 1 [Cucumis sativus]	[more]
KGN46749.1	1.3e-85	100.00	hypothetical protein Csa_6G128590 [Cucumis sativus]	[more]
XP_008448281.1	8.8e-74	85.10	PREDICTED: clathrin light chain 1 [Cucumis melo]	[more]
XP_023532092.1	5.6e-60	90.84	clathrin light chain 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022140721.1	1.2e-59	91.60	clathrin light chain 1 [Momordica charantia]	[more]

BLAST of CsGy6G010660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20760.1	1.8e-49	77.60	Clathrin light chain protein	[more]
AT3G51890.1	6.4e-34	60.47	Clathrin light chain protein	[more]
AT2G40060.1	7.1e-33	56.06	Clathrin light chain protein	[more]

BLAST of CsGy6G010660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKU1\|CLC1_ARATH	3.3e-48	77.60	Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1	[more]
sp\|Q7XKE9\|CLC1_ORYSJ	1.8e-46	72.52	Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 ...	[more]
sp\|Q5Z402\|CLC2_ORYSJ	5.2e-41	70.87	Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 ...	[more]
sp\|F4J5M9\|CLC3_ARATH	1.2e-32	60.47	Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1	[more]
sp\|O04209\|CLC2_ARATH	1.3e-31	56.06	Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1	[more]

BLAST of CsGy6G010660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD26\|A0A0A0KD26_CUCSA	8.7e-86	100.00	Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1	[more]
tr\|A0A1S3BJB2\|A0A1S3BJB2_CUCME	5.8e-74	85.10	Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1	[more]
tr\|A0A2P6RTR4\|A0A2P6RTR4_ROSCH	7.2e-56	85.38	Clathrin light chain OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126241 PE=3 SV...	[more]
tr\|A0A200PQQ8\|A0A200PQQ8_9MAGN	7.9e-55	83.97	Clathrin light chain OS=Macleaya cordata OX=56857 GN=BVC80_9087g57 PE=3 SV=1	[more]
tr\|A0A2P5B4C3\|A0A2P5B4C3_PARAD	7.4e-53	82.95	Clathrin light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_271960 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030132	clathrin coat of coated pit
GO:0030130	clathrin coat of trans-Golgi network vesicle

Vocabulary: **Molecular Function**
Term	Definition
GO:0005198	structural molecule activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR000996	Clathrin_L-chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030132	clathrin coat of coated pit
cellular_component	GO:0030130	clathrin coat of trans-Golgi network vesicle
cellular_component	GO:0005829	cytosol
molecular_function	GO:0032050	clathrin heavy chain binding
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G010660.1	CsGy6G010660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 65..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..349
None	No IPR available	PANTHER	PTHR10639:SF8	CLATHRIN LIGHT CHAIN 1	coord: 59..246
IPR000996	Clathrin light chain	PANTHER	PTHR10639	CLATHRIN LIGHT CHAIN	coord: 59..246

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G010660	Cla013570	Watermelon (97103) v1	cgybwmB490
CsGy6G010660	Csa6G128590	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G010660	MELO3C013605	Melon (DHL92) v3.5.1	cgybmeB384
CsGy6G010660	ClCG02G017550	Watermelon (Charleston Gray)	cgybwcgB415
CsGy6G010660	CSPI06G10580	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G010660	CmaCh20G001920	Cucurbita maxima (Rimu)	cgybcmaB804
CsGy6G010660	CmaCh02G001060	Cucurbita maxima (Rimu)	cgybcmaB812
CsGy6G010660	CmoCh20G002110	Cucurbita moschata (Rifu)	cgybcmoB783
CsGy6G010660	CmoCh02G001070	Cucurbita moschata (Rifu)	cgybcmoB792
CsGy6G010660	Lsi10G008880	Bottle gourd (USVL1VR-Ls)	cgyblsiB383
CsGy6G010660	Cp4.1LG05g14880	Cucurbita pepo (Zucchini)	cgybcpeB857
CsGy6G010660	Cp4.1LG16g07950	Cucurbita pepo (Zucchini)	cgybcpeB760
CsGy6G010660	MELO3C013605.2	Melon (DHL92) v3.6.1	cgybmedB386
CsGy6G010660	CsaV3_6G013030	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G010660	Cla97C02G043300	Watermelon (97103) v2	cgybwmbB421
CsGy6G010660	Bhi10G000874	Wax gourd	cgybwgoB571
CsGy6G010660	Carg13580	Silver-seed gourd	carcgybB0030
CsGy6G010660	Carg18447	Silver-seed gourd	carcgybB0423

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G010660	Cucumber (Gy14) v2	cgybcgybB156
CsGy6G010660	Cucurbita maxima (Rimu)	cgybcmaB806
CsGy6G010660	Cucurbita moschata (Rifu)	cgybcmoB784
CsGy6G010660	Cucurbita pepo (Zucchini)	cgybcpeB761
CsGy6G010660	Cucumber (Chinese Long) v2	cgybcuB292
CsGy6G010660	Bottle gourd (USVL1VR-Ls)	cgyblsiB395
CsGy6G010660	Melon (DHL92) v3.5.1	cgybmeB401
CsGy6G010660	Melon (DHL92) v3.6.1	cgybmedB400
CsGy6G010660	Wild cucumber (PI 183967)	cgybcpiB298
CsGy6G010660	Silver-seed gourd	carcgybB0716
CsGy6G010660	Cucumber (Chinese Long) v3	cgybcucB310
CsGy6G010660	Wax gourd	cgybwgoB541