CsGy6G010510.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G010510.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pyrroline-5-carboxylate reductase
Location	Chr6 : 9024363 .. 9024830 (+)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATACTGTACAAAACAAGCCAAAAGGAAGAAAGAACAAAGGAGCCATCTTGGAGTTCACCAAAACAATGGCCTCTAGTTCTACTACTCTTGGGATGTACTTTTGGTTCCATTCTATTTGGTTCAGTGCACCAAAATAGTAGTGCTAGTGTAGTTGTGGTTGGTGGCTTGATGGTTTTGGCTGCAGTGGGGGTGGCGGTGGCGGTGGCGGTTATTGGTGTGGCGGGGTTGGTGACGTGGATCACAGTTGTGGTTTTTTTATGGTTAATTGGGAGGTCGAGACGGAGGTTGGTGGCGGAGGGGAGGAAGATTAGTAAAGAGATAATGGTGGGGTTTATGGTGAGGGTTTTATTGAAAGAAGGCAATGTTTTGGGTGCCATTTCAGCTGCTGTTTTTGGTTACCTTGGTCTTTGCATGGGCTCCATTATTATTTCTTCCTACTCCAAATTATTTTGGTTGAAATAA

mRNA sequence

ATGGCAATACTGTACAAAACAAGCCAAAAGGAAGAAAGAACAAAGGAGCCATCTTGGAGTTCACCAAAACAATGGCCTCTAGTTCTACTACTCTTGGGATGTACTTTTGGTTCCATTCTATTTGGTTCAGTGCACCAAAATAGTAGTGCTAGTGTAGTTGTGGTTGGTGGCTTGATGGTTTTGGCTGCAGTGGGGGTGGCGGTGGCGGTGGCGGTTATTGGTGTGGCGGGGTTGGTGACGTGGATCACAGTTGTGGTTTTTTTATGGTTAATTGGGAGGTCGAGACGGAGGTTGGTGGCGGAGGGGAGGAAGATTAGTAAAGAGATAATGGTGGGGTTTATGGTGAGGGTTTTATTGAAAGAAGGCAATGTTTTGGGTGCCATTTCAGCTGCTGTTTTTGGTTACCTTGGTCTTTGCATGGGCTCCATTATTATTTCTTCCTACTCCAAATTATTTTGGTTGAAATAA

Coding sequence (CDS)

ATGGCAATACTGTACAAAACAAGCCAAAAGGAAGAAAGAACAAAGGAGCCATCTTGGAGTTCACCAAAACAATGGCCTCTAGTTCTACTACTCTTGGGATGTACTTTTGGTTCCATTCTATTTGGTTCAGTGCACCAAAATAGTAGTGCTAGTGTAGTTGTGGTTGGTGGCTTGATGGTTTTGGCTGCAGTGGGGGTGGCGGTGGCGGTGGCGGTTATTGGTGTGGCGGGGTTGGTGACGTGGATCACAGTTGTGGTTTTTTTATGGTTAATTGGGAGGTCGAGACGGAGGTTGGTGGCGGAGGGGAGGAAGATTAGTAAAGAGATAATGGTGGGGTTTATGGTGAGGGTTTTATTGAAAGAAGGCAATGTTTTGGGTGCCATTTCAGCTGCTGTTTTTGGTTACCTTGGTCTTTGCATGGGCTCCATTATTATTTCTTCCTACTCCAAATTATTTTGGTTGAAATAA

Protein sequence

MAILYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMVLAAVGVAVAVAVIGVAGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK

Homology

[Close]

BLAST of CsGy6G010510.1 vs. NCBI nr
Match: KGN46737.1 (hypothetical protein Csa_6G127980 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.9e-68
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAILYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV 60
           MA+LYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV
Sbjct: 31  MAVLYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV 90

Query: 61  LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLK 120
           LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKE+MVGFMVRVLLK
Sbjct: 91  LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEVMVGFMVRVLLK 150

Query: 121 EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK 156
           EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK
Sbjct: 151 EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK 185

[Close]

BLAST of CsGy6G010510.1 vs. NCBI nr
Match: XP_023534045.1 (uncharacterized protein LOC111795714 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11
Identity = 64/138 (46.38%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 12  ERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMVLAAXXXXXXXX 71
           E  ++  +  P+ W      LGC  G + F  V      ++VVVGGL+V  A        
Sbjct: 2   EGARKAPFFPPQLWAAA---LGC--GVVAFCLVQLGHYCTLVVVGGLLVSLA-------- 61

Query: 72  XXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAA 131
           XXXXX         VFL LIGRSR+R+VAEGRKISKEIMVG +V+VLLKEG VLG +  A
Sbjct: 62  XXXXXXXXXXXXXXVFLVLIGRSRQRVVAEGRKISKEIMVGLVVKVLLKEGKVLGGLCGA 121

Query: 132 VFGYLGLCMG-SIIISSY 149
           V G L +  G S+ I+ Y
Sbjct: 122 VLGCLAVAWGPSLPIAHY 126

[Close]

BLAST of CsGy6G010510.1 vs. NCBI nr
Match: OWM91039.1 (hypothetical protein CDL15_Pgr023372 [Punica granatum] >PKI54646.1 hypothetical protein CRG98_024997 [Punica granatum])

HSP 1 Score: 66.6 bits (161), Expect = 8.3e-08
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 20  SSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMVLAAXXXXXXXXXXXXXGLV 79
           S P  WP V       + S++ G+V            GL+ + A              LV
Sbjct: 68  SGPSGWPAV-------YASVMLGAVF-----------GLLSMVAALAVAVPAM-----LV 127

Query: 80  TWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLGL 139
           TWITVVV L   G+ RR LV EGRKI++EI VGF+ ++LLKEGNV+ A+  AV GY  L
Sbjct: 128 TWITVVVLLAFFGKPRRTLVVEGRKITREI-VGFVCKILLKEGNVVAAV-CAVVGYFAL 161

[Close]

BLAST of CsGy6G010510.1 vs. NCBI nr
Match: OIW08365.1 (hypothetical protein TanjilG_03041 [Lupinus angustifolius])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLG 137
           LVTWIT+VV L   G+ RR LV EGRKI++EI V F+V++LLKEGNV+ A+  AV GY  
Sbjct: 103 LVTWITIVVLLAFFGKPRRTLVVEGRKITREIFV-FVVKILLKEGNVVAAV-CAVLGYFA 161

Query: 138 L 139
           L
Sbjct: 163 L 161

[Close]

BLAST of CsGy6G010510.1 vs. NCBI nr
Match: XP_019449027.1 (PREDICTED: uncharacterized protein LOC109351836 [Lupinus angustifolius])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLG 137
           LVTWIT+VV L   G+ RR LV EGRKI++EI V F+V++LLKEGNV+ A+  AV GY  
Sbjct: 138 LVTWITIVVLLAFFGKPRRTLVVEGRKITREIFV-FVVKILLKEGNVVAAV-CAVLGYFA 196

Query: 138 L 139
           L
Sbjct: 198 L 196

[Close]

BLAST of CsGy6G010510.1 vs. TAIR10
Match: AT4G03600.1 (unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYL 137
           +V WI+VVV L   G+SRR LV EGRKI++E+ VGF+ +VLLKEGNV+ A  A +  +L
Sbjct: 96  MVIWISVVVLLAFFGKSRRVLVVEGRKITREV-VGFVFKVLLKEGNVVAAFCAVLAYFL 153

[Close]

BLAST of CsGy6G010510.1 vs. TAIR10
Match: AT1G03730.1 (unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-08
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGY 136
           +V WI+VVV L   G+SRR LV E RKI++E+  GF+ +VLLKEGN + A+  AV GY
Sbjct: 101 MVIWISVVVLLAFFGKSRRVLVVEARKITREVF-GFVFKVLLKEGNAVAAV-CAVLGY 156

[Close]

BLAST of CsGy6G010510.1 vs. TAIR10
Match: AT4G28330.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-08
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 41  FGSVHQNSS------ASVVV--VGGLMVLAAXXXXXXXXXXXXXGLVTWITVVVFLWLIG 100
           +G  HQ SS      ASV++  V G++ +AA              +V WI+VVV +   G
Sbjct: 52  YGENHQTSSGLPAIYASVLLGAVFGVLSMAAALFIAVPAI-----VVIWISVVVTMAFAG 111

Query: 101 RSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLGLCMGSIIISSYS 150
           +SR+R+V EGRK++KEI  GF+ RVLLKEGN + A+  A+  Y       +  +SYS
Sbjct: 112 KSRKRVVIEGRKVTKEI-AGFVFRVLLKEGNFV-ALLCALLAYF------VFFNSYS 155

[Close]

BLAST of CsGy6G010510.1 vs. TAIR10
Match: AT4G28340.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 41  FGSVHQNSS------ASVVV--VGGLMVLAAXXXXXXXXXXXXXGLVTWITVVVFLWLIG 100
           +G  HQ SS      ASV++  V G++ +AA              +V WI+VVV +    
Sbjct: 52  YGENHQTSSGLPAIYASVLLGAVFGVLSMAAALFIAVPAI-----VVIWISVVVTIAFPV 111

Query: 101 RSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAV 133
           +SR+++V EGRK++KEI  G++ +VLLKEGN +  + A +
Sbjct: 112 KSRKKVVIEGRKVTKEI-AGYVFKVLLKEGNFVALLCAVI 145

[Close]

BLAST of CsGy6G010510.1 vs. TrEMBL
Match: tr|A0A0A0KE95|A0A0A0KE95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127980 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAILYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV 60
           MA+LYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV
Sbjct: 31  MAVLYKTSQKEERTKEPSWSSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMV 90

Query: 61  LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLK 120
           LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKE+MVGFMVRVLLK
Sbjct: 91  LAAXXXXXXXXXXXXXGLVTWITVVVFLWLIGRSRRRLVAEGRKISKEVMVGFMVRVLLK 150

Query: 121 EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK 156
           EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK
Sbjct: 151 EGNVLGAISAAVFGYLGLCMGSIIISSYSKLFWLK 185

[Close]

BLAST of CsGy6G010510.1 vs. TrEMBL
Match: tr|A0A218Y2G8|A0A218Y2G8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr023372 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-08
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 20  SSPKQWPLVLLLLGCTFGSILFGSVHQNSSASVVVVGGLMVLAAXXXXXXXXXXXXXGLV 79
           S P  WP V       + S++ G+V            GL+ + A              LV
Sbjct: 68  SGPSGWPAV-------YASVMLGAVF-----------GLLSMVAALAVAVPAM-----LV 127

Query: 80  TWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLGL 139
           TWITVVV L   G+ RR LV EGRKI++EI VGF+ ++LLKEGNV+ A+  AV GY  L
Sbjct: 128 TWITVVVLLAFFGKPRRTLVVEGRKITREI-VGFVCKILLKEGNVVAAV-CAVVGYFAL 161

[Close]

BLAST of CsGy6G010510.1 vs. TrEMBL
Match: tr|W9QTB5|W9QTB5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004790 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLG 137
           LVTWI +VV L   G+ RR LV EGRKI++EI VGF++++LLKEGNV+ A+  AV GY  
Sbjct: 98  LVTWIAIVVLLAFFGKPRRDLVVEGRKITREI-VGFVLKILLKEGNVVAAV-CAVLGYFA 156

Query: 138 L 139
           L
Sbjct: 158 L 156

[Close]

BLAST of CsGy6G010510.1 vs. TrEMBL
Match: tr|A0A2P4M2W0|A0A2P4M2W0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60978 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLG 137
           LVTWIT++V L   G+ +R LV EGR I+KEI VGF++++LLKEGNV+ A+  AV GY  
Sbjct: 20  LVTWITIIVLLTFFGKPKRDLVVEGRTITKEI-VGFLLKILLKEGNVVAAV-CAVLGYFA 78

Query: 138 L 139
           L
Sbjct: 80  L 78

[Close]

BLAST of CsGy6G010510.1 vs. TrEMBL
Match: tr|A0A2N9F0Z5|A0A2N9F0Z5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8423 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 78  LVTWITVVVFLWLIGRSRRRLVAEGRKISKEIMVGFMVRVLLKEGNVLGAISAAVFGYLG 137
           LVTWITV+V L   G+ +R LV EGR ++KEI VGF++++LLKEGNV+ A+  AV GY  
Sbjct: 107 LVTWITVMVLLAFFGKPKRTLVVEGRMVTKEI-VGFLLKILLKEGNVVAAV-CAVLGYFA 165

Query: 138 L 139
           L
Sbjct: 167 L 165

The following BLAST results are available for this feature:

BLAST of CsGy6G010510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46737.1	1.9e-68	98.71	hypothetical protein Csa_6G127980 [Cucumis sativus]	[more]
XP_023534045.1	3.6e-11	46.38	uncharacterized protein LOC111795714 [Cucurbita pepo subsp. pepo]	[more]
OWM91039.1	8.3e-08	41.18	hypothetical protein CDL15_Pgr023372 [Punica granatum] >PKI54646.1 hypothetical ...	[more]
OIW08365.1	1.4e-07	60.66	hypothetical protein TanjilG_03041 [Lupinus angustifolius]	[more]
XP_019449027.1	1.4e-07	60.66	PREDICTED: uncharacterized protein LOC109351836 [Lupinus angustifolius]	[more]

BLAST of CsGy6G010510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03600.1	1.8e-09	55.93	unknown protein	[more]
AT1G03730.1	1.6e-08	55.17	unknown protein	[more]
AT4G28330.1	4.6e-08	39.32	unknown protein	[more]
AT4G28340.1	3.3e-06	37.00	unknown protein	[more]

BLAST of CsGy6G010510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G010510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KE95\|A0A0A0KE95_CUCSA	1.2e-68	98.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127980 PE=4 SV=1	[more]
tr\|A0A218Y2G8\|A0A218Y2G8_PUNGR	5.5e-08	41.18	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr023372 PE=4 SV=1	[more]
tr\|W9QTB5\|W9QTB5_9ROSA	2.1e-07	59.02	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004790 PE=4 SV=1	[more]
tr\|A0A2P4M2W0\|A0A2P4M2W0_QUESU	2.1e-07	57.38	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60978 PE=4 SV=1	[more]
tr\|A0A2N9F0Z5\|A0A2N9F0Z5_FAGSY	3.6e-07	57.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8423 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G010510	CsGy6G010510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G010510.1.exon.1	CsGy6G010510.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G010510.1.CDS.1	CsGy6G010510.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G010510.1	CsGy6G010510.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR34656	FAMILY NOT NAMED	coord: 48..140
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..34 score: 5.0