CsGy5G012860.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G012860.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 15418220 .. 15418699 (+)
Sequence length	189

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGTTGGTACGCTAAAATTATTTACTCTGCAAAAAGTAAACTTCAATGTTTGATGTATGTGTAAAGCTTAATAATATGAATTAAACATGATATTTGAAGCTCTCAAATGAAACTTGACAATTATTGTCTTCTAATAATACATTGGACATTGTAATAATATAGTGGACATGCCATGATGCCAAATTTTTCGAAATCCCAACCCAATCCTTAGTTTTTAAATATATTTTTCTTTAAAATTTTAAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGGTACTTCTTTTTTTAAAAAAAAATATTAACGTTAGGAATATTTTAGGTAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

mRNA sequence

CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

Coding sequence (CDS)

CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

Protein sequence

RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSRAYRNFETSNLKFRQQSFIPFDHVQIYRERRI

Homology

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BLAST of CsGy5G012860.1 vs. NCBI nr
Match: KGN65085.1 (hypothetical protein Csa_1G201260 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 33
           RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR
Sbjct: 101 RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 132

[Close]

BLAST of CsGy5G012860.1 vs. TrEMBL
Match: tr|A0A0A0LT62|A0A0A0LT62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 33
           RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR
Sbjct: 101 RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 132

The following BLAST results are available for this feature:

BLAST of CsGy5G012860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65085.1	4.1e-06	100.00	hypothetical protein Csa_1G201260 [Cucumis sativus]	[more]

BLAST of CsGy5G012860.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G012860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G012860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT62\|A0A0A0LT62_CUCSA	2.7e-06	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G012860	CsGy5G012860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G012860.1	CsGy5G012860.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G012860.1.exon.1	CsGy5G012860.1.exon.1	exon
CsGy5G012860.1.exon.2	CsGy5G012860.1.exon.2	exon
CsGy5G012860.1.exon.3	CsGy5G012860.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G012860.1.CDS.1	CsGy5G012860.1.CDS.1	CDS
CsGy5G012860.1.CDS.2	CsGy5G012860.1.CDS.2	CDS
CsGy5G012860.1.CDS.3	CsGy5G012860.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29