CsGy5G012860 (gene) Cucumber (Gy14) v2

NameCsGy5G012860
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr5 : 15418220 .. 15418699 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGTTGGTACGCTAAAATTATTTACTCTGCAAAAAGTAAACTTCAATGTTTGATGTATGTGTAAAGCTTAATAATATGAATTAAACATGATATTTGAAGCTCTCAAATGAAACTTGACAATTATTGTCTTCTAATAATACATTGGACATTGTAATAATATAGTGGACATGCCATGATGCCAAATTTTTCGAAATCCCAACCCAATCCTTAGTTTTTAAATATATTTTTCTTTAAAATTTTAAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGGTACTTCTTTTTTTAAAAAAAAATATTAACGTTAGGAATATTTTAGGTAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

mRNA sequence

CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

Coding sequence (CDS)

CGTGCGTCTTCTCTCCCCTCAGTTTCTCGCCCGCCATCCGCTCCCTCCTCAGTAGCCGTACGTCTCCTGTCTCCCTCCGACGGCCATTCTAGCAGGGCATATCGAAATTTTGAAACATCAAATTTAAAGTTTCGGCAACAAAGTTTCATTCCATTTGACCATGTCCAAATCTACAGGGAGAGGAGAATT

Protein sequence

RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSRAYRNFETSNLKFRQQSFIPFDHVQIYRERRI
BLAST of CsGy5G012860 vs. NCBI nr
Match: KGN65085.1 (hypothetical protein Csa_1G201260 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 1   RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 33
           RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR
Sbjct: 101 RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 132

BLAST of CsGy5G012860 vs. TrEMBL
Match: tr|A0A0A0LT62|A0A0A0LT62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 1   RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 33
           RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR
Sbjct: 101 RASSLPSVSRPPSAPSSVAVRLLSPSDGHSSR 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65085.14.1e-06100.00hypothetical protein Csa_1G201260 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LT62|A0A0A0LT62_CUCSA2.7e-06100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=3 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G012860.1CsGy5G012860.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None