CsGy5G010580.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010580.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	PHD finger protein ING
Location	Chr5 : 11014762 .. 11015947 (-)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTATGAATAATGGAATTTTCAATTTTCAATTGATTTTTTTCTATTGTTCTTCTGAATTGTTTCATTATTTTTATGATGGGGTTGAATGGTTATTGATTTTACTTTTCATCATTTTGTAGGCACTGTTTTCGGGGTTGTTACTGACTGAAATTACTCTAGATTCATATAAAGTTAAAGATGTTCCTGAAGCTTGAAAGGTTCCATTTTCTTTCTATGAATTGCCATTTGGGAATTTGATATGCAGGTGAGAGCATGAAATCATTTTGCTGTTGTGGTAACATATTCCCCTGTTTCTGTTACAATAATGCCAAAAAGACAATGTGTAAATAATTAGCAAAATAAACGTTGAAGTAACTGTAAATTTTGTTAGCCAAGTTTCTTGGTTCTTCTGTTCACTGTACAACTCTTTAACTATCTGAAATGCTATACAATGCAAGGCACATTGGTTGTTAGGAAAGATAAACTTTACCTATATTCTATAGGAGAAATTTTCTATTAAGTACATATTACCTACATTGTTGCACTCTGTTGAAGAGAACCCTTTATGTATCTTTATCAATTGCTTTGACGGTAGCTTCAAAATCCTGACATATATAAAAGGTAAAGCCAATTTATTATTTTTTCTATATATGCATTTCTGTGTGAAGCATACAGAATATGCATTGCTGCATTTTTCTGCTTTAAATTTTGACATTCTTGATTTCTGCGTTGTTCTTTTTTCATTTCTTGCTTGAATCCTAGTACATGATAAACTGCATAATGCATTCCTTTTTATCTCTTTAGGGGTGGGGGAGGATAGTTGGTGCACATTGCTACATTTACATTTTTTTCTTTGTTTTTTTAGCTTACTTGGCTATTTAGAGAATAAAAAAGATATTGGCTTTTTTTCCCTTAACTTTGTGATCTATTTATTATCTTAGTTTTTTATTTCAATATTTTACTTACATTTTCAATACTTTTAATGGCTTTTTAGGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

mRNA sequence

ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

Coding sequence (CDS)

ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

Protein sequence

MSNAVSKKFKDIKRGVKCGNISPDTSLIRFFDEAQKHSIRIANERRGQELYKSKWMLVGEGKSPYAMSNV

Homology

[Close]

BLAST of CsGy5G010580.1 vs. NCBI nr
Match: XP_004134022.1 (PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650897.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650898.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650899.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >KGN56782.1 hypothetical protein Csa_3G133330 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. NCBI nr
Match: XP_008438417.1 (PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438418.1 PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438419.1 PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438420.1 PREDICTED: PHD finger protein ING1 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. NCBI nr
Match: XP_011650900.1 (PREDICTED: PHD finger protein ING1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. NCBI nr
Match: XP_022157961.1 (PHD finger protein ING1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. NCBI nr
Match: XP_022944129.1 (PHD finger protein ING1 [Cucurbita moschata] >XP_022944213.1 PHD finger protein ING1 [Cucurbita moschata] >XP_022944294.1 PHD finger protein ING1 [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. TAIR10
Match: AT3G24010.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          K+ +DI+RG + GNI+P+TSL +F +EA   QKHS+RIA+E+
Sbjct: 45 KEIEDIRRG-RAGNITPNTSLTKFSEEALDEQKHSVRIADEK 85

[Close]

BLAST of CsGy5G010580.1 vs. Swiss-Prot
Match: sp|Q9LIQ6|ING1_ARATH (PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-04
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          K+ +DI+RG + GNI+P+TSL +F +EA   QKHS+RIA+E+
Sbjct: 45 KEIEDIRRG-RAGNITPNTSLTKFSEEALDEQKHSVRIADEK 85

[Close]

BLAST of CsGy5G010580.1 vs. TrEMBL
Match: tr|A0A1S3AWY6|A0A1S3AWY6_CUCME (PHD finger protein ING OS=Cucumis melo OX=3656 GN=LOC103483518 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. TrEMBL
Match: tr|A0A0A0L831|A0A0A0L831_CUCSA (PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_3G133330 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. TrEMBL
Match: tr|B9RWQ1|B9RWQ1_RICCO (PHD finger protein ING OS=Ricinus communis OX=3988 GN=RCOM_1023520 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-06
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+PDTSLIRF D+A   QKHSIRIA+E+
Sbjct: 45 REIEDIKRGVKAGNITPDTSLIRFSDDALDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. TrEMBL
Match: tr|A0A067KNI8|A0A067KNI8_JATCU (PHD finger protein ING OS=Jatropha curcas OX=180498 GN=JCGZ_12923 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+PDTSLIRF DE    QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKVGNITPDTSLIRFSDETLDEQKHSIRIADEK 86

[Close]

BLAST of CsGy5G010580.1 vs. TrEMBL
Match: tr|B9GZZ6|B9GZZ6_POPTR (PHD finger protein ING OS=Populus trichocarpa OX=3694 GN=POPTR_003G174000v3 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+P+TSLIRF DEA   QKHSIRIA+E+
Sbjct: 46 QEIEDIKRGVKAGNITPNTSLIRFSDEALDEQKHSIRIADEK 87

The following BLAST results are available for this feature:

BLAST of CsGy5G010580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134022.1	4.2e-07	73.81	PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650897.1 ...	[more]
XP_008438417.1	4.2e-07	73.81	PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438418.1 PREDICTED: PHD...	[more]
XP_011650900.1	4.2e-07	73.81	PREDICTED: PHD finger protein ING1 isoform X2 [Cucumis sativus]	[more]
XP_022157961.1	4.2e-07	73.81	PHD finger protein ING1 [Momordica charantia]	[more]
XP_022944129.1	4.2e-07	73.81	PHD finger protein ING1 [Cucurbita moschata] >XP_022944213.1 PHD finger protein ...	[more]

BLAST of CsGy5G010580.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24010.1	1.2e-05	54.76	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of CsGy5G010580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LIQ6\|ING1_ARATH	2.2e-04	54.76	PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1	[more]

BLAST of CsGy5G010580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWY6\|A0A1S3AWY6_CUCME	2.8e-07	73.81	PHD finger protein ING OS=Cucumis melo OX=3656 GN=LOC103483518 PE=3 SV=1	[more]
tr\|A0A0A0L831\|A0A0A0L831_CUCSA	2.8e-07	73.81	PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_3G133330 PE=3 SV=1	[more]
tr\|B9RWQ1\|B9RWQ1_RICCO	5.2e-06	69.05	PHD finger protein ING OS=Ricinus communis OX=3988 GN=RCOM_1023520 PE=3 SV=1	[more]
tr\|A0A067KNI8\|A0A067KNI8_JATCU	1.2e-05	69.05	PHD finger protein ING OS=Jatropha curcas OX=180498 GN=JCGZ_12923 PE=3 SV=1	[more]
tr\|B9GZZ6\|B9GZZ6_POPTR	1.2e-05	69.05	PHD finger protein ING OS=Populus trichocarpa OX=3694 GN=POPTR_003G174000v3 PE=3...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G010580	CsGy5G010580	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G010580.1.CDS.2	CsGy5G010580.1.CDS.2	CDS
CsGy5G010580.1.CDS.1	CsGy5G010580.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G010580.1.exon.2	CsGy5G010580.1.exon.2	exon
CsGy5G010580.1.exon.1	CsGy5G010580.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G010580.1	CsGy5G010580.1-protein	polypeptide