CsGy5G010580 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G010580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPHD finger protein ING
LocationChr5 : 11014762 .. 11015947 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTATGAATAATGGAATTTTCAATTTTCAATTGATTTTTTTCTATTGTTCTTCTGAATTGTTTCATTATTTTTATGATGGGGTTGAATGGTTATTGATTTTACTTTTCATCATTTTGTAGGCACTGTTTTCGGGGTTGTTACTGACTGAAATTACTCTAGATTCATATAAAGTTAAAGATGTTCCTGAAGCTTGAAAGGTTCCATTTTCTTTCTATGAATTGCCATTTGGGAATTTGATATGCAGGTGAGAGCATGAAATCATTTTGCTGTTGTGGTAACATATTCCCCTGTTTCTGTTACAATAATGCCAAAAAGACAATGTGTAAATAATTAGCAAAATAAACGTTGAAGTAACTGTAAATTTTGTTAGCCAAGTTTCTTGGTTCTTCTGTTCACTGTACAACTCTTTAACTATCTGAAATGCTATACAATGCAAGGCACATTGGTTGTTAGGAAAGATAAACTTTACCTATATTCTATAGGAGAAATTTTCTATTAAGTACATATTACCTACATTGTTGCACTCTGTTGAAGAGAACCCTTTATGTATCTTTATCAATTGCTTTGACGGTAGCTTCAAAATCCTGACATATATAAAAGGTAAAGCCAATTTATTATTTTTTCTATATATGCATTTCTGTGTGAAGCATACAGAATATGCATTGCTGCATTTTTCTGCTTTAAATTTTGACATTCTTGATTTCTGCGTTGTTCTTTTTTCATTTCTTGCTTGAATCCTAGTACATGATAAACTGCATAATGCATTCCTTTTTATCTCTTTAGGGGTGGGGGAGGATAGTTGGTGCACATTGCTACATTTACATTTTTTTCTTTGTTTTTTTAGCTTACTTGGCTATTTAGAGAATAAAAAAGATATTGGCTTTTTTTCCCTTAACTTTGTGATCTATTTATTATCTTAGTTTTTTATTTCAATATTTTACTTACATTTTCAATACTTTTAATGGCTTTTTAGGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

mRNA sequence

ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

Coding sequence (CDS)

ATGAGCAACGCTGTGAGCAAGAAATTTAAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTTCTCCTGATACTTCACTCATTAGATTCTTTGATGAAGCTCAGAAGCATAGCATCAGAATTGCCAATGAAAGAAGAGGCCAAGAGTTGTACAAAAGCAAATGGATGTTGGTTGGTGAAGGAAAATCGCCATATGCAATGTCCAATGTCTAG

Protein sequence

MSNAVSKKFKDIKRGVKCGNISPDTSLIRFFDEAQKHSIRIANERRGQELYKSKWMLVGEGKSPYAMSNV
Homology
[Close]
BLAST of CsGy5G010580 vs. NCBI nr
Match: XP_004134022.1 (PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650897.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650898.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650899.1 PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >KGN56782.1 hypothetical protein Csa_3G133330 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. NCBI nr
Match: XP_008438417.1 (PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438418.1 PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438419.1 PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438420.1 PREDICTED: PHD finger protein ING1 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. NCBI nr
Match: XP_011650900.1 (PREDICTED: PHD finger protein ING1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. NCBI nr
Match: XP_022157961.1 (PHD finger protein ING1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. NCBI nr
Match: XP_022944129.1 (PHD finger protein ING1 [Cucurbita moschata] >XP_022944213.1 PHD finger protein ING1 [Cucurbita moschata] >XP_022944294.1 PHD finger protein ING1 [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. TAIR10
Match: AT3G24010.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          K+ +DI+RG + GNI+P+TSL +F +EA   QKHS+RIA+E+
Sbjct: 45 KEIEDIRRG-RAGNITPNTSLTKFSEEALDEQKHSVRIADEK 85

[Close]
BLAST of CsGy5G010580 vs. Swiss-Prot
Match: sp|Q9LIQ6|ING1_ARATH (PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-04
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          K+ +DI+RG + GNI+P+TSL +F +EA   QKHS+RIA+E+
Sbjct: 45 KEIEDIRRG-RAGNITPNTSLTKFSEEALDEQKHSVRIADEK 85

[Close]
BLAST of CsGy5G010580 vs. TrEMBL
Match: tr|A0A1S3AWY6|A0A1S3AWY6_CUCME (PHD finger protein ING OS=Cucumis melo OX=3656 GN=LOC103483518 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. TrEMBL
Match: tr|A0A0A0L831|A0A0A0L831_CUCSA (PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_3G133330 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVKCGNI+PDTSLIRF DEA   QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. TrEMBL
Match: tr|B9RWQ1|B9RWQ1_RICCO (PHD finger protein ING OS=Ricinus communis OX=3988 GN=RCOM_1023520 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-06
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+PDTSLIRF D+A   QKHSIRIA+E+
Sbjct: 45 REIEDIKRGVKAGNITPDTSLIRFSDDALDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. TrEMBL
Match: tr|A0A067KNI8|A0A067KNI8_JATCU (PHD finger protein ING OS=Jatropha curcas OX=180498 GN=JCGZ_12923 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+PDTSLIRF DE    QKHSIRIA+E+
Sbjct: 45 QEIEDIKRGVKVGNITPDTSLIRFSDETLDEQKHSIRIADEK 86

[Close]
BLAST of CsGy5G010580 vs. TrEMBL
Match: tr|B9GZZ6|B9GZZ6_POPTR (PHD finger protein ING OS=Populus trichocarpa OX=3694 GN=POPTR_003G174000v3 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 7  KKFKDIKRGVKCGNISPDTSLIRFFDEA---QKHSIRIANER 46
          ++ +DIKRGVK GNI+P+TSLIRF DEA   QKHSIRIA+E+
Sbjct: 46 QEIEDIKRGVKAGNITPNTSLIRFSDEALDEQKHSIRIADEK 87

The following BLAST results are available for this feature:
BLAST of CsGy5G010580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134022.14.2e-0773.81PREDICTED: PHD finger protein ING1 isoform X1 [Cucumis sativus] >XP_011650897.1 ... [more]
XP_008438417.14.2e-0773.81PREDICTED: PHD finger protein ING1 [Cucumis melo] >XP_008438418.1 PREDICTED: PHD... [more]
XP_011650900.14.2e-0773.81PREDICTED: PHD finger protein ING1 isoform X2 [Cucumis sativus][more]
XP_022157961.14.2e-0773.81PHD finger protein ING1 [Momordica charantia][more]
XP_022944129.14.2e-0773.81PHD finger protein ING1 [Cucurbita moschata] >XP_022944213.1 PHD finger protein ... [more]
BLAST of CsGy5G010580 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24010.11.2e-0554.76RING/FYVE/PHD zinc finger superfamily protein[more]
BLAST of CsGy5G010580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LIQ6|ING1_ARATH2.2e-0454.76PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1[more]
BLAST of CsGy5G010580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWY6|A0A1S3AWY6_CUCME2.8e-0773.81PHD finger protein ING OS=Cucumis melo OX=3656 GN=LOC103483518 PE=3 SV=1[more]
tr|A0A0A0L831|A0A0A0L831_CUCSA2.8e-0773.81PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_3G133330 PE=3 SV=1[more]
tr|B9RWQ1|B9RWQ1_RICCO5.2e-0669.05PHD finger protein ING OS=Ricinus communis OX=3988 GN=RCOM_1023520 PE=3 SV=1[more]
tr|A0A067KNI8|A0A067KNI8_JATCU1.2e-0569.05PHD finger protein ING OS=Jatropha curcas OX=180498 GN=JCGZ_12923 PE=3 SV=1[more]
tr|B9GZZ6|B9GZZ6_POPTR1.2e-0569.05PHD finger protein ING OS=Populus trichocarpa OX=3694 GN=POPTR_003G174000v3 PE=3... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G010580.1CsGy5G010580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G010580CsaV3_5G014090Cucumber (Chinese Long) v3cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G010580Cucurbita maxima (Rimu)cgybcmaB667
CsGy5G010580Cucurbita moschata (Rifu)cgybcmoB645
CsGy5G010580Cucurbita pepo (Zucchini)cgybcpeB663
CsGy5G010580Cucumber (Chinese Long) v2cgybcuB225
CsGy5G010580Bottle gourd (USVL1VR-Ls)cgyblsiB312
CsGy5G010580Melon (DHL92) v3.6.1cgybmedB315
CsGy5G010580Watermelon (Charleston Gray)cgybwcgB330
CsGy5G010580Watermelon (97103) v1cgybwmB411
CsGy5G010580Wild cucumber (PI 183967)cgybcpiB227
CsGy5G010580Watermelon (97103) v2cgybwmbB344