CsGy5G002970.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G002970.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 1931915 .. 1932163 (+)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

mRNA sequence

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Coding sequence (CDS)

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Protein sequence

MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGKRKKIRSETYKEADEIALQRHEA

Homology

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BLAST of CsGy5G002970.1 vs. NCBI nr
Match: KGN50126.1 (hypothetical protein Csa_5G154880 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 83
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

[Close]

BLAST of CsGy5G002970.1 vs. TrEMBL
Match: tr|A0A0A0KQX8|A0A0A0KQX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 83
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

The following BLAST results are available for this feature:

BLAST of CsGy5G002970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50126.1	2.9e-36	98.78	hypothetical protein Csa_5G154880 [Cucumis sativus]	[more]

BLAST of CsGy5G002970.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G002970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G002970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQX8\|A0A0A0KQX8_CUCSA	1.9e-36	98.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G002970	CsGy5G002970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G002970.1.exon.1	CsGy5G002970.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G002970.1.CDS.1	CsGy5G002970.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G002970.1	CsGy5G002970.1-protein	polypeptide