CsGy5G002970 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G002970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 1931915 .. 1932163 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

mRNA sequence

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Coding sequence (CDS)

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Protein sequence

MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGKRKKIRSETYKEADEIALQRHEA

Homology

[Close]

BLAST of CsGy5G002970 vs. NCBI nr
Match: KGN50126.1 (hypothetical protein Csa_5G154880 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 83
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

[Close]

BLAST of CsGy5G002970 vs. TrEMBL
Match: tr|A0A0A0KQX8|A0A0A0KQX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 83
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

The following BLAST results are available for this feature:

BLAST of CsGy5G002970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50126.1	2.9e-36	98.78	hypothetical protein Csa_5G154880 [Cucumis sativus]	[more]

BLAST of CsGy5G002970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G002970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G002970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQX8\|A0A0A0KQX8_CUCSA	1.9e-36	98.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G002970.1	CsGy5G002970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G002970	Csa5G154880	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G002970	CsaV3_5G003060	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G002970	Cucumber (Chinese Long) v3	cgybcucB216
CsGy5G002970	Watermelon (97103) v2	cgybwmbB319
CsGy5G002970	Watermelon (97103) v2	cgybwmbB367
CsGy5G002970	Wax gourd	cgybwgoB427
CsGy5G002970	Wax gourd	cgybwgoB456
CsGy5G002970	Cucumber (Gy14) v2	cgybcgybB091
CsGy5G002970	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G002970	Cucurbita maxima (Rimu)	cgybcmaB621
CsGy5G002970	Cucurbita maxima (Rimu)	cgybcmaB630
CsGy5G002970	Cucurbita maxima (Rimu)	cgybcmaB635
CsGy5G002970	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G002970	Cucurbita moschata (Rifu)	cgybcmoB597
CsGy5G002970	Cucurbita moschata (Rifu)	cgybcmoB606
CsGy5G002970	Cucurbita moschata (Rifu)	cgybcmoB613
CsGy5G002970	Cucurbita pepo (Zucchini)	cgybcpeB578
CsGy5G002970	Cucurbita pepo (Zucchini)	cgybcpeB584
CsGy5G002970	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G002970	Cucurbita pepo (Zucchini)	cgybcpeB691
CsGy5G002970	Cucumber (Chinese Long) v2	cgybcuB213
CsGy5G002970	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G002970	Bottle gourd (USVL1VR-Ls)	cgyblsiB342
CsGy5G002970	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G002970	Melon (DHL92) v3.5.1	cgybmeB353
CsGy5G002970	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G002970	Melon (DHL92) v3.6.1	cgybmedB353
CsGy5G002970	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G002970	Watermelon (Charleston Gray)	cgybwcgB360
CsGy5G002970	Watermelon (97103) v1	cgybwmB381
CsGy5G002970	Watermelon (97103) v1	cgybwmB378
CsGy5G002970	Wild cucumber (PI 183967)	cgybcpiB213
CsGy5G002970	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G002970	Silver-seed gourd	carcgybB0912
CsGy5G002970	Silver-seed gourd	carcgybB0927