CsGy4G024960.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCGTAAGAGATTTTTACTGTTATTATTTTGTATATATTCACACGTTTAAATGGTATACGTACGACTGATTGTGTAATTATTTCGTTTATTTTGTAGATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGAGTACGTACGCATCTATTATAAAATATTTAATTTGTGGGATTAATTAAAAGGACAAATAATTAACTTATGATGAAACCTATATGCAGTGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTTGGTCCAGCAAGCTTTTGAGCTTCTCCAAATGGACAACTTTATGCAAGTTTTCAAATTCCTTATGATTTTTCTCCCCTTAATGTTAAAATTACGGATTTTGGTTCACACCACGTCGTAGTTTCTTGATATCTTTCATGCTCACTCTATTTATTATATGTTAGGATCTACAGATAGTAAACAAATATATACTAGATGGTTACTTCTTCATGTTTGATATTTCACGAAAATCTTAAGAAGAATAATGTAATCGAATTGGAATCAAAGGACCAAATTCGAACATATATTTGATGTCTATTTTTCAAGAACATGATGTAACATGTCATCGGTACTCATCATGAAATGCAGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD
BLAST of CsGy4G024960.1 vs. NCBI nr
Match: KGN55471.1 (hypothetical protein Csa_4G652830 [Cucumis sativus]) HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. NCBI nr
Match: XP_011654419.1 (PREDICTED: topless-related protein 1-like [Cucumis sativus]) HSP 1 Score: 362.1 bits (928), Expect = 1.1e-96 Identity = 182/197 (92.39%), Postives = 182/197 (92.39%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. NCBI nr
Match: XP_008452906.1 (PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical protein [Cucumis melo subsp. melo]) HSP 1 Score: 359.4 bits (921), Expect = 7.3e-96 Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. NCBI nr
Match: XP_008452905.1 (PREDICTED: protein TPR1-like isoform X1 [Cucumis melo]) HSP 1 Score: 349.4 bits (895), Expect = 7.6e-93 Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. NCBI nr
Match: XP_022139726.1 (protein TPR1-like isoform X2 [Momordica charantia]) HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78 Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TAIR10
Match: AT1G80490.2 (TOPLESS-related 1) HSP 1 Score: 130.6 bits (327), Expect = 1.0e-30 Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TAIR10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein) HSP 1 Score: 129.4 bits (324), Expect = 2.2e-30 Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TAIR10
Match: AT3G16830.1 (TOPLESS-related 2) HSP 1 Score: 126.7 bits (317), Expect = 1.4e-29 Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TAIR10
Match: AT3G15880.2 (WUS-interacting protein 2) HSP 1 Score: 124.4 bits (311), Expect = 7.2e-29 Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TAIR10
Match: AT5G27030.2 (TOPLESS-related 3) HSP 1 Score: 120.9 bits (302), Expect = 7.9e-28 Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. Swiss-Prot
Match: sp|Q5NBT9|TPR1_ORYSJ (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29 Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. Swiss-Prot
Match: sp|Q0WV90|TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3) HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29 Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. Swiss-Prot
Match: sp|Q0J7U6|TPR2_ORYSJ (Protein TPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 3.1e-29 Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. Swiss-Prot
Match: sp|Q94AI7|TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.0e-29 Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. Swiss-Prot
Match: sp|Q9LRZ0|TPR2_ARATH (Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2) HSP 1 Score: 126.7 bits (317), Expect = 2.6e-28 Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TrEMBL
Match: tr|A0A0A0L5R0|A0A0A0L5R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 7.2e-100 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TrEMBL
Match: tr|A0A1S3BVS3|A0A1S3BVS3_CUCME (protein TPR1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 4.8e-96 Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TrEMBL
Match: tr|E5GCC7|E5GCC7_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 4.8e-96 Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TrEMBL
Match: tr|A0A1S3BUX9|A0A1S3BUX9_CUCME (protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 5.0e-93 Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0
BLAST of CsGy4G024960.1 vs. TrEMBL
Match: tr|A0A2N9EET2|A0A2N9EET2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS981 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 6.2e-35 Identity = 78/169 (46.15%), Postives = 112/169 (66.27%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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